Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0677.Seq
         (449 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   1.2  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   3.6  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   3.6  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   3.6  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   6.2  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 271 SWPRVVRAGVSESGFGFVASSCVNAVXWRSV 363
           +W      GV+  G G VAS   +A  W+S+
Sbjct: 907 TWSNSQVQGVAVPGSGIVASGQQHAGGWQSI 937


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
 Frame = -3

Query: 318 TEPALRHSCPDDTRPRHH*PLILLQRKTNSINMIDFTGGRTSCES----ARVGTTAP 160
           T P +  S    +   +  P + +  K++SIN ++    + SC S    +  G TAP
Sbjct: 454 TVPIIAESYGSGSTNFNERPAVAVVSKSSSINKLEDLRNKKSCHSGYKDSFAGWTAP 510


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
 Frame = -3

Query: 318 TEPALRHSCPDDTRPRHH*PLILLQRKTNSINMIDFTGGRTSCES----ARVGTTAP 160
           T P +  S    +   +  P + +  K++SIN ++    + SC S    +  G TAP
Sbjct: 454 TVPIIAESYGSGSTNFNERPAVAVVSKSSSINKLEDLRNKKSCHSGYKDSFAGWTAP 510


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
 Frame = -3

Query: 318 TEPALRHSCPDDTRPRHH*PLILLQRKTNSINMIDFTGGRTSCES----ARVGTTAP 160
           T P +  S    +   +  P + +  K++SIN ++    + SC S    +  G TAP
Sbjct: 454 TVPIIAESYGSGSTNFNERPAVAVVSKSSSINKLEDLRNKKSCHSGYKDSFAGWTAP 510


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +3

Query: 156 GRGRWYLPA 182
           G G+WYLP+
Sbjct: 236 GDGKWYLPS 244


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,236
Number of Sequences: 438
Number of extensions: 2769
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)