Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0677.Seq
         (449 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g01560.1 68416.m00086 proline-rich family protein contains pr...    29   1.9  
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    28   2.5  
At5g28810.1 68418.m03542 hypothetical protein                          28   3.4  

>At3g01560.1 68416.m00086 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 511

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 157 AGGGGTYPRGLTRGPTTSKINHINTIRFP 243
           +GGG + PR  +R P    I+ + T+ FP
Sbjct: 441 SGGGSSSPRSESRAPIDDVIDRVTTMGFP 469


>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 22/69 (31%), Positives = 25/69 (36%)
 Frame = -3

Query: 447 SPLSKFXRHXSHRPXGSVSXXRPREAXRHRSPXNSIYTRARXETEPALRHSCPDDTRPRH 268
           SP     RH S  P           A RHRSP  +   R R  + PA R   P     R 
Sbjct: 332 SPSPPARRHRSPTPPARQRRSPSPPARRHRSPPPA--RRRRSPSPPARRRRSPSPPARRR 389

Query: 267 H*PLILLQR 241
             P  L +R
Sbjct: 390 RSPSPLYRR 398


>At5g28810.1 68418.m03542 hypothetical protein
          Length = 560

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 295 GVSES-GFGFVASSCVNAVXWRSVARSFSWT 384
           G+ E+ GFG    +CV  + WRS  + F++T
Sbjct: 185 GIGEACGFGKTTLTCVPLLDWRSSRKRFNFT 215


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,466,897
Number of Sequences: 28952
Number of extensions: 192322
Number of successful extensions: 430
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)