Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0676.Seq
         (598 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    22   3.4  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    22   3.4  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    21   7.9  

>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = -2

Query: 207 NGNINFNKPCITLWLC 160
           NGN+   K C   W C
Sbjct: 161 NGNVPLGKSCNRYWQC 176


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 189 NKPCITLWLCVVLSL*MHLKIVMAVPRLVDSF 94
           N P +TL LC ++S  + + I + + R V  F
Sbjct: 310 NDPKVTLELCGMISTYLIIMIQLDLARTVPKF 341


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +1

Query: 364 VCALLVXYANLIPLHIXWSHQFLRTFW 444
           V ++    A LI   I W    L TFW
Sbjct: 249 VVSIFYMSAYLISNPIMWDRVMLLTFW 275


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,068
Number of Sequences: 336
Number of extensions: 1941
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)