Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0676.Seq
(598 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY928072-1|AAX78396.1| 1319|Drosophila melanogaster hyperpolariz... 34 0.17
AY928071-1|AAX78395.1| 627|Drosophila melanogaster hyperpolariz... 34 0.17
AY928070-1|AAX78394.1| 618|Drosophila melanogaster hyperpolariz... 34 0.17
AY928069-1|AAX78393.1| 1282|Drosophila melanogaster hyperpolariz... 34 0.17
AY060342-1|AAL25381.1| 245|Drosophila melanogaster GH23838p pro... 34 0.17
AF124300-1|AAD42059.1| 945|Drosophila melanogaster putative vol... 34 0.17
AE013599-1869|ABC66060.1| 627|Drosophila melanogaster CG8585-PD... 34 0.17
AE013599-1868|ABC66059.1| 618|Drosophila melanogaster CG8585-PC... 34 0.17
AE013599-1867|ABC66058.1| 1290|Drosophila melanogaster CG8585-PB... 34 0.17
AE013599-1866|ABC66057.1| 1327|Drosophila melanogaster CG8585-PE... 34 0.17
>AY928072-1|AAX78396.1| 1319|Drosophila melanogaster
hyperpolarization-activated ionchannel variant
DMIH-A1B2C2 protein.
Length = 1319
Score = 33.9 bits (74), Expect = 0.17
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +1
Query: 331 HQCSSLLLYCSVCALLVXYANLI--PLHIXWSHQFLRTFWI 447
H CSS Y +C LL+ ANLI P+ I + + L T WI
Sbjct: 739 HPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWI 779
>AY928071-1|AAX78395.1| 627|Drosophila melanogaster
hyperpolarization-activated ionchannel variant
DMIH-A3B1C1 protein.
Length = 627
Score = 33.9 bits (74), Expect = 0.17
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +1
Query: 331 HQCSSLLLYCSVCALLVXYANLI--PLHIXWSHQFLRTFWI 447
H CSS Y +C LL+ ANLI P+ I + + L T WI
Sbjct: 84 HPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWI 124
>AY928070-1|AAX78394.1| 618|Drosophila melanogaster
hyperpolarization-activated ionchannel variant
DMIH-A2B1C1 protein.
Length = 618
Score = 33.9 bits (74), Expect = 0.17
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +1
Query: 331 HQCSSLLLYCSVCALLVXYANLI--PLHIXWSHQFLRTFWI 447
H CSS Y +C LL+ ANLI P+ I + + L T WI
Sbjct: 75 HPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWI 115
>AY928069-1|AAX78393.1| 1282|Drosophila melanogaster
hyperpolarization-activated ionchannel variant
DMIH-A1B1C1 protein.
Length = 1282
Score = 33.9 bits (74), Expect = 0.17
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +1
Query: 331 HQCSSLLLYCSVCALLVXYANLI--PLHIXWSHQFLRTFWI 447
H CSS Y +C LL+ ANLI P+ I + + L T WI
Sbjct: 739 HPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWI 779
>AY060342-1|AAL25381.1| 245|Drosophila melanogaster GH23838p
protein.
Length = 245
Score = 33.9 bits (74), Expect = 0.17
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +1
Query: 331 HQCSSLLLYCSVCALLVXYANLI--PLHIXWSHQFLRTFWI 447
H CSS Y +C LL+ ANLI P+ I + + L T WI
Sbjct: 75 HPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWI 115
>AF124300-1|AAD42059.1| 945|Drosophila melanogaster putative
voltage- and cyclic nucleotide-gated ion channel
protein.
Length = 945
Score = 33.9 bits (74), Expect = 0.17
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +1
Query: 331 HQCSSLLLYCSVCALLVXYANLI--PLHIXWSHQFLRTFWI 447
H CSS Y +C LL+ ANLI P+ I + + L T WI
Sbjct: 397 HPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWI 437
>AE013599-1869|ABC66060.1| 627|Drosophila melanogaster CG8585-PD,
isoform D protein.
Length = 627
Score = 33.9 bits (74), Expect = 0.17
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +1
Query: 331 HQCSSLLLYCSVCALLVXYANLI--PLHIXWSHQFLRTFWI 447
H CSS Y +C LL+ ANLI P+ I + + L T WI
Sbjct: 84 HPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWI 124
>AE013599-1868|ABC66059.1| 618|Drosophila melanogaster CG8585-PC,
isoform C protein.
Length = 618
Score = 33.9 bits (74), Expect = 0.17
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +1
Query: 331 HQCSSLLLYCSVCALLVXYANLI--PLHIXWSHQFLRTFWI 447
H CSS Y +C LL+ ANLI P+ I + + L T WI
Sbjct: 75 HPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWI 115
>AE013599-1867|ABC66058.1| 1290|Drosophila melanogaster CG8585-PB,
isoform B protein.
Length = 1290
Score = 33.9 bits (74), Expect = 0.17
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +1
Query: 331 HQCSSLLLYCSVCALLVXYANLI--PLHIXWSHQFLRTFWI 447
H CSS Y +C LL+ ANLI P+ I + + L T WI
Sbjct: 747 HPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWI 787
>AE013599-1866|ABC66057.1| 1327|Drosophila melanogaster CG8585-PE,
isoform E protein.
Length = 1327
Score = 33.9 bits (74), Expect = 0.17
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +1
Query: 331 HQCSSLLLYCSVCALLVXYANLI--PLHIXWSHQFLRTFWI 447
H CSS Y +C LL+ ANLI P+ I + + L T WI
Sbjct: 747 HPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWI 787
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,030,236
Number of Sequences: 53049
Number of extensions: 333837
Number of successful extensions: 838
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2420893683
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -