Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0676.Seq
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68118-2|CAA92188.2|  165|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U41274-6|AAA82462.1|  601|Caenorhabditis elegans Hypothetical pr...    29   1.9  
U41039-6|AAK68626.1|  135|Caenorhabditis elegans Synapse defecti...    27   7.7  
U41039-5|AAL11488.1|  357|Caenorhabditis elegans Synapse defecti...    27   7.7  
U41039-4|AAL11489.1|  452|Caenorhabditis elegans Synapse defecti...    27   7.7  
U41039-3|AAK68627.2|  537|Caenorhabditis elegans Synapse defecti...    27   7.7  

>Z68118-2|CAA92188.2|  165|Caenorhabditis elegans Hypothetical
           protein R01E6.2 protein.
          Length = 165

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +2

Query: 188 LKLMFPFVIPRSYHHGSRCRCL 253
           L L+FPFV+P +Y++G+   C+
Sbjct: 8   LALLFPFVLPFNYNNGASAACI 29


>U41274-6|AAA82462.1|  601|Caenorhabditis elegans Hypothetical
           protein T04G9.6 protein.
          Length = 601

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 158 TQSHKVMQGLLKLMFPFVIPRSY 226
           ++ HK+ + L   +FPF IPRSY
Sbjct: 514 SRCHKITKDLSNSLFPFCIPRSY 536


>U41039-6|AAK68626.1|  135|Caenorhabditis elegans Synapse defective
           protein 9, isoformb protein.
          Length = 135

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 349 LLYCSVCALLVXYANLIPLHIXWSHQF 429
           +L+C  C  LV  ++ +P+H+  SH +
Sbjct: 69  MLHCKECGTLVRKSSHLPIHMTMSHGY 95


>U41039-5|AAL11488.1|  357|Caenorhabditis elegans Synapse defective
           protein 9, isoforma protein.
          Length = 357

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 349 LLYCSVCALLVXYANLIPLHIXWSHQF 429
           +L+C  C  LV  ++ +P+H+  SH +
Sbjct: 291 MLHCKECGTLVRKSSHLPIHMTMSHGY 317


>U41039-4|AAL11489.1|  452|Caenorhabditis elegans Synapse defective
           protein 9, isoformd protein.
          Length = 452

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 349 LLYCSVCALLVXYANLIPLHIXWSHQF 429
           +L+C  C  LV  ++ +P+H+  SH +
Sbjct: 386 MLHCKECGTLVRKSSHLPIHMTMSHGY 412


>U41039-3|AAK68627.2|  537|Caenorhabditis elegans Synapse defective
           protein 9, isoformc protein.
          Length = 537

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 349 LLYCSVCALLVXYANLIPLHIXWSHQF 429
           +L+C  C  LV  ++ +P+H+  SH +
Sbjct: 369 MLHCKECGTLVRKSSHLPIHMTMSHGY 395


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,357,505
Number of Sequences: 27780
Number of extensions: 173926
Number of successful extensions: 375
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)