Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0676.Seq
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    34   0.001
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    34   0.001
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    34   0.001
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   4.0  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 33.9 bits (74), Expect = 0.001
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +1

Query: 331 HQCSSLLLYCSVCALLVXYANLI--PLHIXWSHQFLRTFWI 447
           H CSS   Y  +C LL+  ANLI  P+ I + +  L T WI
Sbjct: 82  HPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWI 122


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 33.9 bits (74), Expect = 0.001
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +1

Query: 331 HQCSSLLLYCSVCALLVXYANLI--PLHIXWSHQFLRTFWI 447
           H CSS   Y  +C LL+  ANLI  P+ I + +  L T WI
Sbjct: 82  HPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWI 122


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 33.9 bits (74), Expect = 0.001
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +1

Query: 331 HQCSSLLLYCSVCALLVXYANLI--PLHIXWSHQFLRTFWI 447
           H CSS   Y  +C LL+  ANLI  P+ I + +  L T WI
Sbjct: 82  HPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWI 122


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 6/26 (23%), Positives = 16/26 (61%)
 Frame = +1

Query: 478 LIAQIS*PVFYVWCYCXXLSXESYCL 555
           LI+ +   ++Y+W +   +  E++C+
Sbjct: 103 LISGLPPEIYYIWSHFPYVFGEAFCI 128


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,884
Number of Sequences: 438
Number of extensions: 2120
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)