Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0674.Seq
         (605 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33554| Best HMM Match : Sushi (HMM E-Value=0.00055)                 33   0.14 
SB_52009| Best HMM Match : Plasmodium_HRP (HMM E-Value=7.9)            33   0.14 
SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)                 30   1.7  
SB_49821| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_54830| Best HMM Match : Fascin (HMM E-Value=2.6)                    29   3.9  
SB_51910| Best HMM Match : ig (HMM E-Value=4.9e-05)                    28   6.7  
SB_22454| Best HMM Match : Ribosomal_L35p (HMM E-Value=4.5)            28   6.7  
SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_59684| Best HMM Match : C1_3 (HMM E-Value=8.3)                      27   8.9  
SB_29526| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_28212| Best HMM Match : C1_3 (HMM E-Value=0.59)                     27   8.9  
SB_5632| Best HMM Match : XRN_N (HMM E-Value=3.9)                      27   8.9  

>SB_33554| Best HMM Match : Sushi (HMM E-Value=0.00055)
          Length = 685

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +3

Query: 123 KLYIHVPAHG-ARPITKH*IITYINSERNPHLHGHQYKTTDTYLLHTTCPY 272
           ++++H P H  AR  T+    TY +     H+H H+Y    T+     C Y
Sbjct: 263 QMHVHAPGHANARTRTQARKCTYTHPGTQMHVHAHKYANAHTHTQTRKCTY 313


>SB_52009| Best HMM Match : Plasmodium_HRP (HMM E-Value=7.9)
          Length = 231

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +3

Query: 123 KLYIHVPAHG-ARPITKH*IITYINSERNPHLHGHQYKTTDTYLLHTTCPY 272
           ++++H P H  AR  T+    TY +     H+H H+Y    T+     C Y
Sbjct: 38  QMHVHAPGHANARTRTQARKCTYTHPGTQMHVHAHKYANAHTHTQTRKCTY 88


>SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
          Length = 897

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -3

Query: 168 LLSVWHRVLGRECKALLYNNIRCSSSNVLYDC-DCYCTVNLFLILSCGMS 22
           L SV +  +     ++LY+ I C  S+VLYD  DC  +  L+  + C +S
Sbjct: 221 LSSVLYDAIDCRLSSVLYDAIDCRLSDVLYDAIDCRLSGVLYDAIDCRLS 270



 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -3

Query: 168 LLSVWHRVLGRECKALLYNNIRCSSSNVLYDC-DCYCTVNLFLILSCGMS 22
           L  V +  L     ++LY+ I C  S+VLYD  DC  +  L+  + C +S
Sbjct: 65  LSCVLYDALDCRLSSVLYDAIDCRLSSVLYDAIDCRLSCVLYDAIDCRLS 114



 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -3

Query: 168 LLSVWHRVLGRECKALLYNNIRCSSSNVLYDC-DCYCTVNLFLILSCGMS 22
           L SV +  +      +LY+ I C  S+VLYD  DC  +  L+  + C +S
Sbjct: 89  LSSVLYDAIDCRLSCVLYDAIDCRLSSVLYDAIDCRLSDVLYDAIDCRLS 138



 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 123 LLYNNIRCSSSNVLYDC-DCYCTVNLFLILSCGMS 22
           +LY+ I C  S VLYD  DC  +  L++ + C +S
Sbjct: 8   VLYDAIDCRLSCVLYDAIDCRLSCVLYVAIDCRLS 42



 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -3

Query: 168 LLSVWHRVLGRECKALLYNNIRCSSSNVLYDC-DCYCTVNLFLILSCGMS 22
           L  V +  +      +LY+ I C  S VLYD  DC  +  L++ + C +S
Sbjct: 137 LSGVLYDAIDCRLSGVLYDAIDCRLSWVLYDAIDCRLSCVLYVAIDCRLS 186



 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -3

Query: 168 LLSVWHRVLGRECKALLYNNIRCSSSNVLYDC-DCYCTVNLFLILSCGMS 22
           L  V +  L     ++LY+ I C  S+VLYD  DC  +  L+  + C +S
Sbjct: 209 LSCVLYDALDCRLSSVLYDAIDCRLSSVLYDAIDCRLSDVLYDAIDCRLS 258



 Score = 28.3 bits (60), Expect = 5.1
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -3

Query: 168 LLSVWHRVLGRECKALLYNNIRCSSSNVLYDC-DCYCTVNLFLILSCGMS 22
           L SV +  +      +LY+ I C  S VLYD  DC  +  L+  + C +S
Sbjct: 113 LSSVLYDAIDCRLSDVLYDAIDCRLSGVLYDAIDCRLSGVLYDAIDCRLS 162


>SB_49821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 819

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +2

Query: 218 RTSVQNNGHIFTSHNMSLRIGKIRA 292
           +TS++ +GH+FTS  + L   K++A
Sbjct: 433 KTSIEFHGHLFTSEGLKLSPNKVKA 457


>SB_54830| Best HMM Match : Fascin (HMM E-Value=2.6)
          Length = 213

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +3

Query: 117 TVKLYI-HV-PAHGARPITKH*IITYINSERNPHLHGHQYKTTDTYLLHTT 263
           TV++YI HV  +  AR        T + + RN HLH  + + TD++ LH T
Sbjct: 12  TVRIYIQHVNDSQNARTCN-----TTLATHRNAHLHESRERLTDSWHLHAT 57


>SB_51910| Best HMM Match : ig (HMM E-Value=4.9e-05)
          Length = 562

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 418 DIEYLGVRSVRAWRILLLKPLIAQSSTIPI 329
           D+E LG R+   W  L+L P++ +   + I
Sbjct: 344 DLESLGARNATGWTDLMLNPIVEKDKEVRI 373


>SB_22454| Best HMM Match : Ribosomal_L35p (HMM E-Value=4.5)
          Length = 214

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +2

Query: 116 YSKALHSRPSTRCQTDNKTLNNYIHQF*A*SPSTRTSVQNNGHIFTS 256
           Y+  LH  P+T  +  N+ LNN I       P ++ +  N GH F S
Sbjct: 43  YNYTLHYEPNTTSKRKNRQLNNIIWYN---PPFSKNTSTNIGHRFLS 86


>SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1718

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 3/97 (3%)
 Frame = +3

Query: 66  NNHNHTKH*SYYIECYCTVKLYIHVPAHGARPITKH*IITYINSERNPHLHGHQYKTTDT 245
           N+ + TKH S    C  +  LY        + +    +   I + +N  +   +  ++D 
Sbjct: 109 NHSSETKH-SRESTCDVSPNLYSKPKQDEQKLLNDDNVDILIEAPQNDCVANEKGASSDV 167

Query: 246 YLLHTT---CPYESVKFEPNTRTVLKTNDNSIGIVED 347
            + H      P E  K E     +++T DNS+GI+ D
Sbjct: 168 EVSHNMGNKLPVEISK-ESRNNVIVQTGDNSLGIIND 203


>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 7645

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/42 (23%), Positives = 24/42 (57%)
 Frame = +3

Query: 207  PHLHGHQYKTTDTYLLHTTCPYESVKFEPNTRTVLKTNDNSI 332
            P ++ H  + ++++ +  TC  E+    P+T TV   +D+++
Sbjct: 4749 PLINDHVVENSESFSIKLTCDEETTSANPDTVTVTVLDDDAV 4790


>SB_59684| Best HMM Match : C1_3 (HMM E-Value=8.3)
          Length = 138

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 7/75 (9%)
 Frame = -1

Query: 356 HCAIFYNSNTIVICF*HC-ACVWLEFYRFVGTCCVK*I------CVRCFVLMSV*MGITL 198
           HC        +  C   C AC  +   R VG C ++ +      CV C V+  V   +  
Sbjct: 26  HCVACCVMRCVACCVMRCVACCVM---RCVGCCVMRCVACRVMRCVACCVMRCVACCVMR 82

Query: 197 RIDVCNYLMFCYRSG 153
            +D C     CY SG
Sbjct: 83  CVDCCVVTFCCYPSG 97


>SB_29526| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1120

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 150 GARPITKH*IITYINSERNPHLHGH-QYKTTDTYLLHTTCP 269
           G   +T + + T+   E  P LH    Y+TT TY++ TT P
Sbjct: 568 GPTSLTPNVLTTFPGFEDPPGLHDKVMYQTTLTYIILTTIP 608


>SB_28212| Best HMM Match : C1_3 (HMM E-Value=0.59)
          Length = 218

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 7/75 (9%)
 Frame = -1

Query: 356 HCAIFYNSNTIVICF*HC-ACVWLEFYRFVGTCCVK*I------CVRCFVLMSV*MGITL 198
           HC        +  C   C AC  +   R VG C ++ +      CV C V+  V   +  
Sbjct: 106 HCVACCVMRCVACCVMRCVACCVM---RCVGCCVMRCVACRVMRCVACCVMRCVACCVMR 162

Query: 197 RIDVCNYLMFCYRSG 153
            +D C     CY SG
Sbjct: 163 CVDCCVVTFCCYPSG 177


>SB_5632| Best HMM Match : XRN_N (HMM E-Value=3.9)
          Length = 766

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 210 HLHGHQYKTTDTYLLHTTCPYESVKFE 290
           HLH    K  +  LLH TC  E ++ E
Sbjct: 105 HLHAWSEKIREAVLLHNTCTPEKIREE 131


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,004,337
Number of Sequences: 59808
Number of extensions: 328173
Number of successful extensions: 869
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)