Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0674.Seq
         (605 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB065580-1|BAC05810.1|  346|Homo sapiens seven transmembrane hel...    37   0.048
AK126537-1|BAC86582.1|  467|Homo sapiens protein ( Homo sapiens ...    31   2.4  
AK124073-1|BAC85767.1|  536|Homo sapiens protein ( Homo sapiens ...    31   2.4  

>AB065580-1|BAC05810.1|  346|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 346

 Score = 37.1 bits (82), Expect = 0.048
 Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 5/110 (4%)
 Frame = -1

Query: 392 CACVENSSFKTSHCAIFYNSNTIVICF*HCACVWLEFYRFVGTCCVK*ICVRCFVLMSV* 213
           C CV  S    S C   Y    + IC   C C+ +     +  C    +CV   V + V 
Sbjct: 5   CDCV--SCVSVSVCLYLYVC--VCICVSVCVCICVSVCVCICVCVSVFVCVCICVCVCVC 60

Query: 212 MGITLRIDVCNYLMFCYRSGTVCWDVNVKLY-----CTITFDVVALMFCM 78
           + + + I VC YL  C    +VC  V+V +Y     C   +  V++  C+
Sbjct: 61  VSMCVSISVCVYLCLCV-CVSVCVYVSVCMYLCVFLCVCVYVSVSVCLCV 109


>AK126537-1|BAC86582.1|  467|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44573 fis, clone UTERU3016789, moderately
           similar to SH3 domain-binding protein 3BP-2. ).
          Length = 467

 Score = 31.5 bits (68), Expect = 2.4
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = -1

Query: 326 IVICF*HCACVWLEFYRFVGTCCVK*ICVRCFVLMSV*MGITLRIDVCNYLMFC 165
           + +C   CACV L  Y  V  C    +C R  V M V + +T+   VC  +  C
Sbjct: 31  LCVCQSMCACVCLSAYPCVHVC----VCQRIRVCMCVSVSLTMCACVCQCIRVC 80


>AK124073-1|BAC85767.1|  536|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42079 fis, clone SYNOV2021320, highly  similar
           to SH3 DOMAIN-BINDING PROTEIN 3BP-2. ).
          Length = 536

 Score = 31.5 bits (68), Expect = 2.4
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = -1

Query: 326 IVICF*HCACVWLEFYRFVGTCCVK*ICVRCFVLMSV*MGITLRIDVCNYLMFC 165
           + +C   CACV L  Y  V  C    +C R  V M V + +T+   VC  +  C
Sbjct: 31  LCVCQSMCACVCLSAYPCVHVC----VCQRIRVCMCVSVSLTMCACVCQCIRVC 80


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,249,445
Number of Sequences: 237096
Number of extensions: 1357641
Number of successful extensions: 2247
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2233
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6410414940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)