Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0674.Seq
         (605 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g32161.1 68418.m03792 hypothetical protein                          28   4.2  
At1g52840.1 68414.m05974 hypothetical protein                          28   5.5  
At5g48910.1 68418.m06051 pentatricopeptide (PPR) repeat-containi...    27   7.3  

>At5g32161.1 68418.m03792 hypothetical protein 
          Length = 193

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 381 HARTLRTPRYSMSWHSLINHN 443
           H R    PRYS  W S+I H+
Sbjct: 97  HTRPFTLPRYSTPWSSIITHH 117


>At1g52840.1 68414.m05974 hypothetical protein
          Length = 163

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 294 LARILPIRRDMLCEVNMCPLFCTDVRVDGDYA 199
           LA+ L I RD+  ++  C  FC +   D D+A
Sbjct: 67  LAKSLQIARDLQVQILFCGNFCDETYKDRDFA 98


>At5g48910.1 68418.m06051 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 646

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +3

Query: 150 GARPITKH*IITYINSERNPHLHGHQYKTTDTYLLHTTCPYESVKFEPNTR 302
           G RPIT   ++     ++   LH H  K    + L +T P + ++   N R
Sbjct: 554 GYRPITTQVLLNLEEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLR 604


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,624,810
Number of Sequences: 28952
Number of extensions: 204288
Number of successful extensions: 439
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)