Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0673.Seq
         (399 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q24IA3 Cluster: IQ calmodulin-binding motif family prot...    31   8.3  

>UniRef50_Q24IA3 Cluster: IQ calmodulin-binding motif family protein;
            n=1; Tetrahymena thermophila SB210|Rep: IQ
            calmodulin-binding motif family protein - Tetrahymena
            thermophila SB210
          Length = 1461

 Score = 31.1 bits (67), Expect = 8.3
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = -2

Query: 266  SKQFSSTYTGSHDDSSEE*RMGTSTLTNLALP 171
            SKQ  +T+  SHD+SSE+  +  S+L++  +P
Sbjct: 1221 SKQIENTFQPSHDNSSEQQEINNSSLSSEMIP 1252


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 281,728,379
Number of Sequences: 1657284
Number of extensions: 4187216
Number of successful extensions: 8380
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 8266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8379
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 16926675320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)