Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0673.Seq
         (399 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0031 - 12477787-12478413,12480182-12480268,12480371-124805...    27   5.5  
02_05_0007 + 24918163-24918420,24919360-24919410,24919411-249194...    27   7.2  
02_01_0708 - 5298456-5298664,5299615-5299768,5300209-5300301,530...    27   7.2  

>12_02_0031 -
           12477787-12478413,12480182-12480268,12480371-12480562,
           12480638-12480766,12480840-12480926,12483076-12483537,
           12485088-12485222
          Length = 572

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 222 LRGMTNGNINFNKPCITLWLCVVLSL*MHLKIVMAVP 112
           L G+T G  N     +TL++C+VL   + + I   VP
Sbjct: 406 LTGLTRGGSNIAYFVVTLYMCIVLVESIMMVIAAVVP 442


>02_05_0007 +
           24918163-24918420,24919360-24919410,24919411-24919480,
           24919645-24919830,24920127-24920275,24921310-24921417,
           24921501-24921638,24922574-24922853,24922924-24923047,
           24923197-24923312,24923612-24923619
          Length = 495

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
 Frame = +3

Query: 54  YTRRLILTSYKLLK----MSQPNEERPSQFLNAFTNLKL 158
           Y+R+L+     ++K    ++ PN+ RP++F   +T LK+
Sbjct: 80  YSRKLLEADGFIVKHITLLANPNQVRPTRFWGVYTKLKI 118


>02_01_0708 -
           5298456-5298664,5299615-5299768,5300209-5300301,
           5300644-5300847,5302034-5302174,5302723-5302827,
           5303485-5303874,5304573-5304713,5304756-5304845,
           5305779-5306288
          Length = 678

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -3

Query: 250 APTPAPMMIAPRNDEWEHQL 191
           +P+P P+++ PR + +EH L
Sbjct: 26  SPSPPPLLLRPRREAFEHGL 45


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,393,014
Number of Sequences: 37544
Number of extensions: 111435
Number of successful extensions: 216
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)