Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0673.Seq
         (399 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41274-6|AAA82462.1|  601|Caenorhabditis elegans Hypothetical pr...    29   0.93 
Z68118-2|CAA92188.2|  165|Caenorhabditis elegans Hypothetical pr...    26   8.7  

>U41274-6|AAA82462.1|  601|Caenorhabditis elegans Hypothetical
           protein T04G9.6 protein.
          Length = 601

 Score = 29.5 bits (63), Expect = 0.93
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 158 TQSHKVMQGLLKLMFPFVIPRSY 226
           ++ HK+ + L   +FPF IPRSY
Sbjct: 514 SRCHKITKDLSNSLFPFCIPRSY 536


>Z68118-2|CAA92188.2|  165|Caenorhabditis elegans Hypothetical
           protein R01E6.2 protein.
          Length = 165

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 9/17 (52%), Positives = 15/17 (88%)
 Frame = +2

Query: 188 LKLMFPFVIPRSYHHGS 238
           L L+FPFV+P +Y++G+
Sbjct: 8   LALLFPFVLPFNYNNGA 24


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,692,364
Number of Sequences: 27780
Number of extensions: 106412
Number of successful extensions: 239
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)