Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0673.Seq
         (399 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    26   0.14 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    26   0.14 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    26   0.14 
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   6.9  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   6.9  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 26.2 bits (55), Expect = 0.14
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 332 HQCSSLLLYCSVCALLVVXAN 394
           H CSS   Y  +C LL++ AN
Sbjct: 82  HPCSSFRFYWDLCMLLLLVAN 102


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 26.2 bits (55), Expect = 0.14
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 332 HQCSSLLLYCSVCALLVVXAN 394
           H CSS   Y  +C LL++ AN
Sbjct: 82  HPCSSFRFYWDLCMLLLLVAN 102


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 26.2 bits (55), Expect = 0.14
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 332 HQCSSLLLYCSVCALLVVXAN 394
           H CSS   Y  +C LL++ AN
Sbjct: 82  HPCSSFRFYWDLCMLLLLVAN 102


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 70  ISRRVYHWLSHKKYNFLNKN 11
           +S R  H  ++ KYN+ N N
Sbjct: 85  LSNRTIHNNNNYKYNYNNNN 104


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 226 SSWEPV*VLENCFD 267
           ++WEP+  L NC D
Sbjct: 273 NTWEPISNLINCSD 286


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,312
Number of Sequences: 438
Number of extensions: 1286
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)