Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0672.Seq
         (538 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   5.2  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   5.2  
AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory recept...    21   5.2  
AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory recept...    21   5.2  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    21   5.2  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   6.9  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = +1

Query: 277  VLCSYKQQWMKNKTYKRSKETLTD 348
            ++C+YK    +N+  ++ +E+L D
Sbjct: 1088 MICTYKADNKENEQLRKIQESLRD 1111


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = +1

Query: 277  VLCSYKQQWMKNKTYKRSKETLTD 348
            ++C+YK    +N+  ++ +E+L D
Sbjct: 1088 MICTYKADNKENEQLRKIQESLRD 1111


>AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory receptor
           candidate 62 protein.
          Length = 320

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = +3

Query: 360 QLQILKYDFNVYSEY*GWKXIVFLTF 437
           Q+  L+   +V+++  GW  ++ +TF
Sbjct: 184 QIYSLRETVDVFNDIFGWPFLLLITF 209


>AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory receptor
           candidate 37 protein.
          Length = 331

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = +3

Query: 360 QLQILKYDFNVYSEY*GWKXIVFLTF 437
           Q+  L+   +V+++  GW  ++ +TF
Sbjct: 184 QIYSLRETVDVFNDIFGWPFLLLITF 209


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = +3

Query: 360 QLQILKYDFNVYSEY*GWKXIVFLTF 437
           Q+  L+   +V+++  GW  ++ +TF
Sbjct: 504 QIYSLRETVDVFNDIFGWPFLLLITF 529


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -1

Query: 58  VFILCIYIFF 29
           +F+LCIY FF
Sbjct: 161 LFLLCIYHFF 170



 Score = 20.6 bits (41), Expect = 9.1
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -1

Query: 58  VFILCIYIFF 29
           +F+LCIY F+
Sbjct: 280 LFLLCIYYFY 289


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,741
Number of Sequences: 336
Number of extensions: 2337
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13097125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)