Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0672.Seq
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    27   2.3  
SPAC343.14c |||translation initiation factor eIF2B|Schizosacchar...    27   2.3  
SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   5.4  
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    25   5.4  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    25   7.2  

>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 302 HCCL*EHNTIDTAAIDHTHTSEIIMSTNYQMTIEQL 195
           H    E  TI    + HT   E+  S NY++T ++L
Sbjct: 354 HISALEKETISHTDLHHTFKHEVNSSNNYELTNDEL 389


>SPAC343.14c |||translation initiation factor
           eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -3

Query: 275 IDTAAIDHTHTSEIIMSTNYQMTIEQLFK 189
           I+  ++DH H++EII++     T+E   +
Sbjct: 191 IEVQSMDHLHSNEIILTQGCSKTVEAFLR 219


>SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 113

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +3

Query: 150 FM*WLSIIIHQRMFEQLLYCH 212
           F+ +L+I +H  +  +L+YCH
Sbjct: 66  FVYYLAITLHTSLLTKLIYCH 86


>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -1

Query: 385 KSYF-SICNCKTNXR*AFPLISCKFYSSSTVVYKNITLLIQPPLITHTLQK**CLQII 215
           +SY  ++ N KT+     P I+      S  V K+ T L+Q PL     QK  CL II
Sbjct: 21  RSYIRNLSNRKTSISRKVP-ITRTLEDPSNFVAKDGTKLVQAPLFLLVWQKEICLSII 77


>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1205

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 528  LRXPLNTGGL*ASSTHLNKKQKKPFTSRSTK 436
            +R P+++     ++ H N KQKK  +S+S K
Sbjct: 1108 IRTPVSSFAKQTTNKHANLKQKKTHSSKSDK 1138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,037,077
Number of Sequences: 5004
Number of extensions: 36379
Number of successful extensions: 74
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)