Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0672.Seq
         (538 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1640 + 38836977-38836988,38837694-38838047,38838164-388382...    30   1.3  
07_03_0493 + 18747427-18748356,18748594-18748697,18749586-187497...    27   9.5  

>01_06_1640 +
           38836977-38836988,38837694-38838047,38838164-38838294,
           38838554-38838860,38839036-38839349,38839507-38839645
          Length = 418

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 159 WLSIIIHQRMFEQLLYCHLIICRHY 233
           W  + +H RM   L  CH+ +CRH+
Sbjct: 351 WQLLELHSRMCSALETCHVPLCRHF 375


>07_03_0493 +
           18747427-18748356,18748594-18748697,18749586-18749795,
           18749992-18750597,18750819-18751095,18751163-18751310,
           18751957-18752044,18752167-18752284
          Length = 826

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 162 LSIIIHQRMFEQLLYCHLIICRHYYF*SVCVINGGCINSVMFL*T 296
           L II+  +    + +C L +C H YF S+ V      N VM   T
Sbjct: 329 LLIIVMCKSHYHVSFCRLYLCEHKYFLSLFVPYVASANIVMLFDT 373


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,065,571
Number of Sequences: 37544
Number of extensions: 193964
Number of successful extensions: 221
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)