Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0672.Seq
         (538 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27994| Best HMM Match : IF-2B (HMM E-Value=5.5e-23)                 31   0.79 
SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0)                      28   5.6  

>SB_27994| Best HMM Match : IF-2B (HMM E-Value=5.5e-23)
          Length = 296

 Score = 30.7 bits (66), Expect = 0.79
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -3

Query: 281 NTIDTAAIDHTHTSEIIMSTNYQMTIEQLFKHS 183
           + I T A++H H++E+IM+     T+E   K++
Sbjct: 135 DNIATQALEHIHSNEVIMTAGKSRTVETFLKNA 167


>SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 3312

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 318  LQEIKGNAYRXFVLQLQILKYDFNV 392
            LQ +KGN+   FV+ L  +KY F +
Sbjct: 2449 LQTLKGNSSLDFVMDLDAIKYSFRL 2473


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,467,561
Number of Sequences: 59808
Number of extensions: 246094
Number of successful extensions: 381
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)