Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0672.Seq
         (538 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81016-4|CAB02662.2| 1885|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z73911-1|CAA98140.1|  262|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AL031627-6|CAA20958.1|  338|Caenorhabditis elegans Hypothetical ...    27   8.6  

>Z81016-4|CAB02662.2| 1885|Caenorhabditis elegans Hypothetical
           protein F21G4.6 protein.
          Length = 1885

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/21 (61%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = -1

Query: 103 YHSFSSGLS--NLVYRNVFIL 47
           YH F  G+S  N VYRNVFI+
Sbjct: 587 YHGFHVGMSVLNWVYRNVFIV 607


>Z73911-1|CAA98140.1|  262|Caenorhabditis elegans Hypothetical
          protein T12A7.3 protein.
          Length = 262

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 64 RNVFILCIYIFFQVNGC*CG 5
          R +F+L +++ F VNGC  G
Sbjct: 2  RLIFLLSVFVIFNVNGCQVG 21


>AL031627-6|CAA20958.1|  338|Caenorhabditis elegans Hypothetical
           protein Y102A5C.15 protein.
          Length = 338

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 147 MNLKTFHFYNN*L*NIIVSRLAYLI*FIGMYLYYVYTYF 31
           M+LKTF      L  +IV   A +I F+    Y+++ +F
Sbjct: 233 MSLKTFQMQKQFLIAVIVQSTAPIICFMVPLFYFIFAFF 271


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,185,138
Number of Sequences: 27780
Number of extensions: 202608
Number of successful extensions: 397
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)