Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0671.Seq
(449 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom... 138 5e-34
SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces ... 27 1.8
SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces pomb... 26 2.3
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ... 26 3.1
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc... 26 3.1
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 4.1
SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 4.1
SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S... 25 7.1
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste... 24 9.4
>SPAC6G10.08 |idp1||isocitrate dehydrogenase
Idp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 418
Score = 138 bits (333), Expect = 5e-34
Identities = 68/127 (53%), Positives = 86/127 (67%), Gaps = 5/127 (3%)
Frame = +2
Query: 5 DFVVPKPGKVELVYTTRDGTTERRV--LYDXKTPGVAMGMYNTDESIRSFAHSSFQVALQ 178
D V PGK+EL +T + + + +Y+ GVAM MYNTD+SIR FAHSSFQ+ALQ
Sbjct: 153 DLVASGPGKLELSFTPKGNPSAKETYNVYEFNGSGVAMSMYNTDDSIRGFAHSSFQMALQ 212
Query: 179 KKWPLYLSTEEYHFETLRWSFQRHFQEVFQSDYKTKFDEAKIWYEHRLIDDMVXQAIK-- 352
KK PLYLST+ + F+ FQEV++SDYK KF+E +WY+HRLIDDMV QAIK
Sbjct: 213 KKMPLYLSTKNTILKKYDGRFKDTFQEVYESDYKQKFEELGLWYQHRLIDDMVAQAIKSN 272
Query: 353 -GSMWXC 370
G +W C
Sbjct: 273 GGFVWAC 279
Score = 29.5 bits (63), Expect = 0.25
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +1
Query: 379 CXNYDGYVSPIFVAHGYXSLGMM 447
C NYDG V VA Y SLG+M
Sbjct: 279 CKNYDGDVMSDVVAQAYGSLGLM 301
>SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 388
Score = 26.6 bits (56), Expect = 1.8
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +2
Query: 128 DESIRSFAHSSFQVALQKKWPLYLSTEEYHFETLR 232
DE + ++S ++ +QK WP + +EY +R
Sbjct: 38 DEKVSFESYSPLKLMIQKTWPRFQEHKEYRESFIR 72
>SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 26.2 bits (55), Expect = 2.3
Identities = 22/98 (22%), Positives = 46/98 (46%), Gaps = 8/98 (8%)
Frame = +2
Query: 8 FVVPKPGKVELVYTTRDGTTERRVLYD-XKTPGVAM----GMYNTDESIRSFAHSSFQVA 172
F++ + G+V + T RR+LYD K G + + N ++ I + + V+
Sbjct: 130 FLLKEKGQVAIYDATNGTRRTRRILYDRFKNCGFKILFIESLCNKEDVINANIQEAIHVS 189
Query: 173 LQ-KKWPLYLSTEEY--HFETLRWSFQRHFQEVFQSDY 277
+ + W L ++ +EY + L+ H++ + + DY
Sbjct: 190 EEFRNWDLEMAEKEYCRRIDILKC----HYETIDEKDY 223
Score = 24.6 bits (51), Expect = 7.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 115 HVQYRRIDSVLCPFQFSGSFTEKMASI 195
HV DSV+ PF+ GS T M+S+
Sbjct: 309 HVLSCMEDSVMSPFRELGSVTSSMSSL 335
>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 621
Score = 25.8 bits (54), Expect = 3.1
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 213 YSSVDRYRGHFF-CKAT*KLEWAKDRIDSSVLYMPIAT 103
Y+ V + +F KAT K EW K++ID L I T
Sbjct: 286 YTDVKSHSNNFAKFKATEKREWVKEKIDLESLLGTIQT 323
>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
Length = 596
Score = 25.8 bits (54), Expect = 3.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 201 LXKNTILKRYDGRFKDIFKKFFRVTTR 281
+ + T+L DG+FKDIF K + R
Sbjct: 413 ITQETLLGLLDGKFKDIFDKCIIIDCR 439
>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 604
Score = 25.4 bits (53), Expect = 4.1
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = -1
Query: 338 PPCRQLNDARTISWLHQT*SCSHSEKLLENVFETTIVTFQ 219
PP + LN A +S L++ + + + LLE+ F I++F+
Sbjct: 553 PPRKLLNKAHLLSCLNKLDAGTDEQILLEDEFTRIIMSFK 592
>SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 25.4 bits (53), Expect = 4.1
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +2
Query: 242 QRHFQEVFQSDYKTKFDEAKIWYEH 316
QR F + F Y T+ A + Y+H
Sbjct: 68 QREFNDTFSPKYSTRLSSAGLIYKH 92
>SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein
Sad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 24.6 bits (51), Expect = 7.1
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -1
Query: 182 FSVKLPENWNGQRTESIRRYCTCP*QRPEF 93
F V+L ++W ++R+Y T P P F
Sbjct: 287 FEVELNDDWKFFIESTVRKYLTDPVSMPNF 316
>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 24.2 bits (50), Expect = 9.4
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = +2
Query: 182 KWPLYLSTEEYHFETLRWSFQRHFQE 259
KW L +S ++YH T ++ + +Q+
Sbjct: 464 KWLLVISVDQYHLATKFANYLKEYQK 489
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,798,970
Number of Sequences: 5004
Number of extensions: 34121
Number of successful extensions: 106
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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