Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0671.Seq
(449 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0194 + 28327328-28327376,28327699-28327742,28327852-283279... 126 8e-30
01_06_0109 - 26526691-26526775,26526894-26527019,26527228-265273... 122 2e-28
04_04_0457 + 25359486-25359571,25360690-25360782,25361561-253616... 117 5e-27
01_01_1031 + 8169505-8169553,8169831-8169905,8170395-8170438,817... 100 5e-22
02_02_0236 + 8135641-8135795,8136167-8136557,8136640-8136931,813... 28 3.0
03_01_0050 + 430744-431337,432131-432249,432539-433084,433177-43... 28 4.0
06_03_1404 - 29928792-29929040,29929147-29929551,29930130-299302... 27 5.3
01_06_1363 - 36681605-36681789,36681875-36681908,36682017-366821... 27 7.0
09_02_0108 - 4358051-4358645,4358722-4359137,4360307-4360903,436... 27 9.2
>05_07_0194 +
28327328-28327376,28327699-28327742,28327852-28327961,
28328250-28328287,28328371-28328448,28328527-28328580,
28328663-28328764,28329152-28329237,28329327-28329430,
28329542-28329610,28329689-28329804,28329949-28329983,
28330152-28330294,28330473-28330598,28330700-28330784
Length = 412
Score = 126 bits (304), Expect = 8e-30
Identities = 63/125 (50%), Positives = 80/125 (64%), Gaps = 3/125 (2%)
Frame = +2
Query: 5 DFVVPKPGKVELVYTTRDGTTERRVLYDXKTPGVAMGMYNTDESIRSFAHSSFQVALQKK 184
D V+ PGK++LVY +D E V GVA MYNTDESIRSFA +S A +KK
Sbjct: 145 DAVIKGPGKLKLVYEGKDEEIELEVFNFTGAGGVAQSMYNTDESIRSFAEASMATAYEKK 204
Query: 185 WPLYLSTEEYHFETLRWSFQRHFQEVFQSDYKTKFDEAKIWYEHRLIDDMVXQAIK---G 355
WPLYLST+ + F+ FQEV+++ +K+KF+ A IWYEHRLIDDMV A+K G
Sbjct: 205 WPLYLSTKNTILKKYDGRFKDIFQEVYEAQWKSKFEAAGIWYEHRLIDDMVAYALKSEGG 264
Query: 356 SMWXC 370
+W C
Sbjct: 265 YVWAC 269
Score = 32.3 bits (70), Expect = 0.19
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 379 CXNYDGYVSPIFVAHGYXSLGMM 447
C NYDG V F+A G+ SLG+M
Sbjct: 269 CKNYDGDVQSDFLAQGFGSLGLM 291
>01_06_0109 -
26526691-26526775,26526894-26527019,26527228-26527370,
26527521-26527555,26527676-26527791,26527868-26527936,
26528070-26528173,26528253-26528338,26528429-26528530,
26528609-26528662,26528763-26528840,26528936-26528973,
26529235-26529344,26529463-26529506,26530232-26530280
Length = 412
Score = 122 bits (293), Expect = 2e-28
Identities = 60/125 (48%), Positives = 81/125 (64%), Gaps = 3/125 (2%)
Frame = +2
Query: 5 DFVVPKPGKVELVYTTRDGTTERRVLYDXKTPGVAMGMYNTDESIRSFAHSSFQVALQKK 184
D V+ PGK++LV+ +D + V GVA+ MYNTDESIR+FA +S A +KK
Sbjct: 145 DAVLKGPGKLKLVFEGKDEQIDLEVFNFTGAGGVALSMYNTDESIRAFAEASMTTAYEKK 204
Query: 185 WPLYLSTEEYHFETLRWSFQRHFQEVFQSDYKTKFDEAKIWYEHRLIDDMVXQAIK---G 355
WPLYLST+ + F+ FQEV+++ +K+KF+ A IWYEHRLIDDMV A+K G
Sbjct: 205 WPLYLSTKNTILKKYDGRFKDIFQEVYEAGWKSKFEAAGIWYEHRLIDDMVAYALKSEGG 264
Query: 356 SMWXC 370
+W C
Sbjct: 265 YVWAC 269
Score = 32.3 bits (70), Expect = 0.19
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 379 CXNYDGYVSPIFVAHGYXSLGMM 447
C NYDG V F+A G+ SLG+M
Sbjct: 269 CKNYDGDVQSDFLAQGFGSLGLM 291
>04_04_0457 +
25359486-25359571,25360690-25360782,25361561-25361622,
25361758-25361816,25363624-25363733,25364795-25364829,
25365469-25365546,25365952-25366005,25366277-25366362,
25366468-25366571,25366986-25367054,25367135-25367250,
25367387-25367421,25367512-25367654,25367808-25367930,
25368463-25368556
Length = 448
Score = 117 bits (281), Expect = 5e-27
Identities = 55/100 (55%), Positives = 69/100 (69%), Gaps = 3/100 (3%)
Frame = +2
Query: 80 LYDXKTPGVAMGMYNTDESIRSFAHSSFQVALQKKWPLYLSTEEYHFETLRWSFQRHFQE 259
+Y+ K PGVA+ MYN DESIR+FA SS +AL KKWPLYLST+ + F+ FQE
Sbjct: 204 VYNFKGPGVALSMYNVDESIRAFAESSMAMALSKKWPLYLSTKNTILKKYDGRFKDIFQE 263
Query: 260 VFQSDYKTKFDEAKIWYEHRLIDDMVXQAIK---GSMWXC 370
V++ +K KF+E IWYEHRLIDDMV A+K G +W C
Sbjct: 264 VYEEKWKEKFEENSIWYEHRLIDDMVAYAVKSEGGYVWAC 303
Score = 32.3 bits (70), Expect = 0.19
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 379 CXNYDGYVSPIFVAHGYXSLGMM 447
C NYDG V F+A G+ SLG+M
Sbjct: 303 CKNYDGDVQSDFLAQGFGSLGLM 325
>01_01_1031 +
8169505-8169553,8169831-8169905,8170395-8170438,
8170633-8170742,8170960-8170997,8171055-8171186,
8171298-8171351,8171424-8171525,8172679-8172764,
8172870-8172973,8173056-8173124,8173156-8173209,
8173210-8173325,8173420-8173454,8173637-8173779,
8174105-8174227,8174305-8174398
Length = 475
Score = 100 bits (240), Expect = 5e-22
Identities = 59/143 (41%), Positives = 80/143 (55%), Gaps = 21/143 (14%)
Frame = +2
Query: 5 DFVVPKPGKVELVYTTRDGTTERRVLYDXKTPGVAMGMYNTDESIRSFAHSSFQVALQKK 184
D V+ PGK++LV+ R+ E V GVA+ MYNTDESI +FA +S +A QK+
Sbjct: 188 DTVIKGPGKLKLVFDGREEQIELDVFNFTGAGGVALSMYNTDESIWAFAEASMNMAYQKR 247
Query: 185 WPLYLSTEEYHFETLRWSFQRHFQEVFQSDYKTKFDEAKIW------------------Y 310
WPLYLST+ + F+ FQE +++ ++ KFD+A IW Y
Sbjct: 248 WPLYLSTKNTILKKYDGRFKDIFQENYETKWRAKFDDAGIWNMEPYFPPLCPNHFCCGRY 307
Query: 311 EHRLIDDMVXQAIK---GSMWXC 370
EHRLIDDMV A+K G +W C
Sbjct: 308 EHRLIDDMVAYALKSEGGYVWAC 330
Score = 30.7 bits (66), Expect = 0.57
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 379 CXNYDGYVSPIFVAHGYXSLGMM 447
C NYDG V +A G+ SLG+M
Sbjct: 330 CKNYDGDVQSDLIAQGFGSLGLM 352
>02_02_0236 +
8135641-8135795,8136167-8136557,8136640-8136931,
8137117-8137271,8137363-8137451,8137623-8137967,
8139046-8139169,8139424-8139581,8139673-8139757,
8140094-8140306,8141314-8141375,8141466-8141951,
8142472-8142568
Length = 883
Score = 28.3 bits (60), Expect = 3.0
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +2
Query: 119 YNTDESIRSFAHSSFQVALQKKWPLYLSTEEYHFET 226
Y+TD++ + F A +W L+ S++E F T
Sbjct: 765 YHTDDAFADSISTDFSDATSSEWSLFTSSDESSFTT 800
>03_01_0050 +
430744-431337,432131-432249,432539-433084,433177-433483,
433605-433773,433861-433960,435805-436103,436796-436869,
437007-437442,437622-437650
Length = 890
Score = 27.9 bits (59), Expect = 4.0
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +2
Query: 86 DXKTPGVAMGMYNTDESIRSFAHSSFQVALQKKWPLYLSTEEYHFETLRWSFQR 247
D GV + + S+ + S F+ +L + Y+ +E H + L W +QR
Sbjct: 406 DDDVYGVELRELLSRRSVSNLLRSGFRESLDQLIQSYVRRQEEHDDPLDWDYQR 459
>06_03_1404 -
29928792-29929040,29929147-29929551,29930130-29930280,
29930363-29930501,29930578-29930743,29930826-29931041,
29931142-29931323,29931412-29931538,29931974-29932112,
29932227-29932353,29932501-29932612,29932704-29932784,
29933330-29933483,29933569-29933689,29934003-29934045,
29934356-29934460
Length = 838
Score = 27.5 bits (58), Expect = 5.3
Identities = 21/98 (21%), Positives = 39/98 (39%), Gaps = 3/98 (3%)
Frame = +2
Query: 47 TTRDGTTERRVLYDXKTPGVAMGMYNTDESIRSFAHS---SFQVALQKKWPLYLSTEEYH 217
T ++ TTE +L D K + T+E F HS F W + + +
Sbjct: 358 TVKETTTEWELLNDVKAIWLRSPKEVTEEEYTKFYHSLAKDFGDDKPLSWSHFTAEGDVE 417
Query: 218 FETLRWSFQRHFQEVFQSDYKTKFDEAKIWYEHRLIDD 331
F+ L + + ++++S Y + K++ I D
Sbjct: 418 FKALLFVPPKAPHDLYESYYNSNKSNLKLYVRRVFISD 455
>01_06_1363 -
36681605-36681789,36681875-36681908,36682017-36682154,
36682578-36682724,36682821-36682865,36683043-36683331,
36683443-36683669,36684109-36684528
Length = 494
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 92 KTPGVAMGMYNTDESIRSFAHSSFQVALQKKWPLY 196
K+P +A ++SF HS F V LQ+ P Y
Sbjct: 394 KSPVIASAWLTIAVGLKSFGHSGFLVNLQEIAPQY 428
>09_02_0108 -
4358051-4358645,4358722-4359137,4360307-4360903,
4361068-4361139,4361236-4361370,4361485-4361585,
4362719-4362863
Length = 686
Score = 26.6 bits (56), Expect = 9.2
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +2
Query: 77 VLYDXKTPG--VAMGMYNTDESIRSFAHSSFQVALQKKWPLYLSTEEYHFETLRWSFQRH 250
VL + PG VA G+ + SF Q ++ + LYL++ + ++ WSF H
Sbjct: 115 VLPNAILPGAQVAGGLPLLQNTCGSFMQL-LQAPIESETALYLTSNRFEYDNTFWSFDSH 173
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,405,572
Number of Sequences: 37544
Number of extensions: 210658
Number of successful extensions: 495
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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