Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0671.Seq
(449 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0) 111 3e-25
SB_26442| Best HMM Match : Iso_dh (HMM E-Value=3.6e-37) 104 4e-23
SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0) 27 5.4
SB_36984| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_27638| Best HMM Match : Baculo_IE-1 (HMM E-Value=4) 27 7.2
SB_25612| Best HMM Match : Cadherin (HMM E-Value=0.034) 27 7.2
SB_46739| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_39920| Best HMM Match : K_tetra (HMM E-Value=1.9e-06) 27 7.2
SB_10820| Best HMM Match : Sulfotransfer_1 (HMM E-Value=0) 27 9.5
SB_40843| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
>SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0)
Length = 644
Score = 111 bits (266), Expect = 3e-25
Identities = 55/125 (44%), Positives = 78/125 (62%), Gaps = 4/125 (3%)
Frame = +2
Query: 2 QDFVVPKPGKVELVYTTRDGTTERRVLYDXK-TPGVAMGMYNTDESIRSFAHSSFQVALQ 178
+DF V PG E+ +T G +++ T GV MGMYNTDE+IR FAHS Q A+
Sbjct: 132 RDFAVNGPGSFEISFTPESGGKLTTEVFEFTGTGGVMMGMYNTDEAIRDFAHSCMQYAIH 191
Query: 179 KKWPLYLSTEEYHFETLRWSFQRHFQEVFQSDYKTKFDEAKIWYEHRLIDDMVXQAIK-- 352
K+ PLY+ST+ + F+ FQ++++ +Y+++F E IWYEHRLIDDMV A+K
Sbjct: 192 KQVPLYMSTKNTILKKYDGRFKDIFQDIYEREYESQFKELGIWYEHRLIDDMVAYALKSE 251
Query: 353 -GSMW 364
G +W
Sbjct: 252 GGFVW 256
>SB_26442| Best HMM Match : Iso_dh (HMM E-Value=3.6e-37)
Length = 296
Score = 104 bits (249), Expect = 4e-23
Identities = 62/127 (48%), Positives = 77/127 (60%), Gaps = 5/127 (3%)
Frame = +2
Query: 5 DFVVPKPGKVELVYTTRDGTTE-RRVLYDXKTPG-VAMGMYNTDESIRSFAHSSFQVALQ 178
DFVVP PGKVE+VY+ DG + + + K G V MGM+NTD SIR+FAHSSFQ AL
Sbjct: 107 DFVVPGPGKVEIVYSPADGGEPIKYTVNEFKDGGGVTMGMFNTDVSIRAFAHSSFQYALD 166
Query: 179 KKWPLYLSTEEYHFETLRWSFQRHFQEVFQSDYKTKFDEAKIWYEHRLIDDMVXQAIK-- 352
KK+PLY+ +YK+KF+E+ IWYEHRLIDDMV A+K
Sbjct: 167 KKYPLYM-----------------------REYKSKFEESNIWYEHRLIDDMVAFALKTE 203
Query: 353 -GSMWXC 370
G +W C
Sbjct: 204 GGFIWAC 210
Score = 31.5 bits (68), Expect = 0.33
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = +1
Query: 379 CXNYDGYVSPIFVAHGYXSLGMM 447
C NYDG V VA G+ SLGMM
Sbjct: 210 CKNYDGDVQSDSVAQGFGSLGMM 232
>SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)
Length = 1291
Score = 27.5 bits (58), Expect = 5.4
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -1
Query: 149 QRTESIRRYCTCP*QR-PEFXNHIIHASLSYH 57
+R E R+ T P QR + NH H +L+YH
Sbjct: 968 ERQEVARKIGTTPAQRLRHYYNHSFHTTLNYH 999
>SB_36984| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 455
Score = 27.5 bits (58), Expect = 5.4
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = +2
Query: 161 FQVALQKKWPLYLSTEEYHFETLRWSFQRHFQEVFQSDYKTKFDEAKIWYEHRLIDDMVX 340
F++ +KKW LYLS ++ E S+ + + +S K A + H D++
Sbjct: 68 FELPPEKKWQLYLSKKKEQAEHSSTSYPEFYIDQLKSLNSQKHGRAHV-LAHPTCIDIIA 126
Query: 341 QAI 349
Q++
Sbjct: 127 QSL 129
>SB_27638| Best HMM Match : Baculo_IE-1 (HMM E-Value=4)
Length = 288
Score = 27.1 bits (57), Expect = 7.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 60 VRQRGVYYMIXKLRALLWACTIPT 131
V+ +G+YY++ R L ACT PT
Sbjct: 189 VKCKGLYYILKGWRWLFCACTTPT 212
>SB_25612| Best HMM Match : Cadherin (HMM E-Value=0.034)
Length = 177
Score = 27.1 bits (57), Expect = 7.2
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 92 KTPGVA-MGMYNTDESIRSFAHSSFQVALQKKWPLYLSTEEYHFETLRWS 238
K PG TD++ ++ A+ V+ + KWP ST + H LR S
Sbjct: 78 KAPGKKRQAQKKTDKAAKNPANKEENVSEENKWPSSRSTVDPHTGVLRTS 127
>SB_46739| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 74
Score = 27.1 bits (57), Expect = 7.2
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = -1
Query: 173 KLPENWNGQRTESIR-RYCTCP*QRPEF--XNHIIHASLSYHL 54
K +W+ ++ I RYC C +RPE N IH S+ Y +
Sbjct: 27 KQTSSWDHRKAPRILYRYCRCHRKRPEVKSKNITIHMSIFYRI 69
>SB_39920| Best HMM Match : K_tetra (HMM E-Value=1.9e-06)
Length = 270
Score = 27.1 bits (57), Expect = 7.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 131 ESIRSFAHSSFQVALQKKWPLYLSTEEYHF 220
+ I +F HS +++L K +P L +E HF
Sbjct: 33 DCIYNFYHSKGEISLPKDYPEQLLADELHF 62
>SB_10820| Best HMM Match : Sulfotransfer_1 (HMM E-Value=0)
Length = 922
Score = 26.6 bits (56), Expect = 9.5
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Frame = +2
Query: 212 YHFETLR-WSFQRHFQEVF------QSDYKTKFDEAKIWYEHR 319
YH TL+ + FQ + + F Q Y + FD W+EHR
Sbjct: 140 YHHRTLKPYCFQEKWNDFFEMMMSGQVQYGSWFDHVLDWWEHR 182
>SB_40843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 26.6 bits (56), Expect = 9.5
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +3
Query: 366 FVXALXKLRRICQSDICRSRLXVIGNDD 449
F+ +L CQSD+C+ ++G D+
Sbjct: 71 FMAVRMRLPETCQSDVCKVMQGILGKDN 98
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,596,330
Number of Sequences: 59808
Number of extensions: 253325
Number of successful extensions: 518
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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