Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0671.Seq
(449 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68343-3|CAA92778.1| 412|Caenorhabditis elegans Hypothetical pr... 130 3e-31
Z81479-7|CAB03943.1| 435|Caenorhabditis elegans Hypothetical pr... 122 2e-28
Z99286-3|CAH60794.1| 320|Caenorhabditis elegans Hypothetical pr... 32 0.22
AF022978-10|AAG24180.2| 275|Caenorhabditis elegans Hypothetical... 28 2.7
AL110485-2|CAE45741.1| 1021|Caenorhabditis elegans Hypothetical ... 27 4.8
AL110485-1|CAB60374.3| 1085|Caenorhabditis elegans Hypothetical ... 27 4.8
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr... 27 8.3
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr... 27 8.3
>Z68343-3|CAA92778.1| 412|Caenorhabditis elegans Hypothetical
protein F59B8.2 protein.
Length = 412
Score = 130 bits (315), Expect = 3e-31
Identities = 64/126 (50%), Positives = 88/126 (69%), Gaps = 4/126 (3%)
Frame = +2
Query: 5 DFVVPKPGKVELVYTTRDGT-TERRVLYDXKTPGVAMGMYNTDESIRSFAHSSFQVALQK 181
DFVVP GK+E+ + + DGT T + ++D K PGV++ MYNTD+SIR FAH+SF+ ALQ+
Sbjct: 144 DFVVPGAGKLEIKFVSADGTQTIQETVFDFKGPGVSLSMYNTDDSIRDFAHASFKYALQR 203
Query: 182 KWPLYLSTEEYHFETLRWSFQRHFQEVFQSDYKTKFDEAKIWYEHRLIDDMVXQAIK--- 352
K+PLYLST+ + F+ F E++ +Y+ +F A IWYEHRLIDDMV QA+K
Sbjct: 204 KFPLYLSTKNTILKKYDGRFKDIFAEIY-PEYEAEFKAAGIWYEHRLIDDMVAQAMKSDG 262
Query: 353 GSMWXC 370
G +W C
Sbjct: 263 GFVWAC 268
Score = 31.9 bits (69), Expect = 0.22
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = +1
Query: 379 CXNYDGYVSPIFVAHGYXSLGMM 447
C NYDG V VA GY SLG+M
Sbjct: 268 CKNYDGDVQSDSVAQGYGSLGLM 290
>Z81479-7|CAB03943.1| 435|Caenorhabditis elegans Hypothetical
protein C34F6.8 protein.
Length = 435
Score = 122 bits (293), Expect = 2e-28
Identities = 58/126 (46%), Positives = 79/126 (62%), Gaps = 4/126 (3%)
Frame = +2
Query: 5 DFVVPKPGKVELVYTTRDGTTERRVLYDXK-TPGVAMGMYNTDESIRSFAHSSFQVALQK 181
D V+P ++L+ DG+ + +YD K + GV + MYNTDESI+ FAHS FQ AL K
Sbjct: 166 DLVIPSGSTLQLLVNKPDGSKDVHNVYDFKKSGGVGLAMYNTDESIKGFAHSCFQYALMK 225
Query: 182 KWPLYLSTEEYHFETLRWSFQRHFQEVFQSDYKTKFDEAKIWYEHRLIDDMVXQAIK--- 352
+WPLYLST+ + F+ FQ++++ Y+ F KIWYEHRLIDD V QA+K
Sbjct: 226 QWPLYLSTKNTILKKYDGRFKDIFQDIYEKKYEADFKNNKIWYEHRLIDDQVAQALKSSG 285
Query: 353 GSMWXC 370
G +W C
Sbjct: 286 GFVWAC 291
Score = 32.7 bits (71), Expect = 0.13
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = +1
Query: 379 CXNYDGYVSPIFVAHGYXSLGMM 447
C NYDG V VA GY SLG+M
Sbjct: 291 CKNYDGDVQSDIVAQGYGSLGLM 313
>Z99286-3|CAH60794.1| 320|Caenorhabditis elegans Hypothetical
protein Y7A9C.9 protein.
Length = 320
Score = 31.9 bits (69), Expect = 0.22
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Frame = +2
Query: 191 LYLSTEEYHFETLRWSFQRHFQEVFQSDYK-----TKFDEAKIWYEH 316
LYLSTE +HF + QR F S K KF K+WY H
Sbjct: 105 LYLSTEAFHFLIFLLAAQRFLVFYFPSTEKHIALFQKFMSKKVWYVH 151
>AF022978-10|AAG24180.2| 275|Caenorhabditis elegans Hypothetical
protein T01G6.10 protein.
Length = 275
Score = 28.3 bits (60), Expect = 2.7
Identities = 17/67 (25%), Positives = 31/67 (46%)
Frame = +2
Query: 26 GKVELVYTTRDGTTERRVLYDXKTPGVAMGMYNTDESIRSFAHSSFQVALQKKWPLYLST 205
G+ E+V + D VL + V G +NTD+S + H +FQ+ + + T
Sbjct: 72 GQDEIVQSALDAFGRIDVLVNNAGANVVDGTFNTDQSTELY-HKTFQINFEAVIEMVKKT 130
Query: 206 EEYHFET 226
+ + E+
Sbjct: 131 KNHLIES 137
>AL110485-2|CAE45741.1| 1021|Caenorhabditis elegans Hypothetical
protein Y46G5A.1b protein.
Length = 1021
Score = 27.5 bits (58), Expect = 4.8
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +3
Query: 219 LKRYDGRFKDIFKKFF-RVTTRLSLMKPRYGTSIV*LTTWWXRLLRDQCGFVXAL 380
L+RY+ FK + KK+ RV L Y + LT WW D+ F AL
Sbjct: 723 LQRYEEHFKRVLKKYKPRVYKHLEKQDIPY----IYLTKWWFGCFLDRVPFSLAL 773
>AL110485-1|CAB60374.3| 1085|Caenorhabditis elegans Hypothetical
protein Y46G5A.1a protein.
Length = 1085
Score = 27.5 bits (58), Expect = 4.8
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +3
Query: 219 LKRYDGRFKDIFKKFF-RVTTRLSLMKPRYGTSIV*LTTWWXRLLRDQCGFVXAL 380
L+RY+ FK + KK+ RV L Y + LT WW D+ F AL
Sbjct: 723 LQRYEEHFKRVLKKYKPRVYKHLEKQDIPY----IYLTKWWFGCFLDRVPFSLAL 773
>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
F54B3.1b protein.
Length = 3394
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 9 LLYRNPERLNLFTLHEMVRQRGV-YYMIXKLRALLW 113
L Y PE + F ++E + YYM+ ++ AL W
Sbjct: 3113 LKYEIPEFVVSFYMYERAKMSSADYYMVDRMEALYW 3148
>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
F54B3.1a protein.
Length = 3396
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 9 LLYRNPERLNLFTLHEMVRQRGV-YYMIXKLRALLW 113
L Y PE + F ++E + YYM+ ++ AL W
Sbjct: 3113 LKYEIPEFVVSFYMYERAKMSSADYYMVDRMEALYW 3148
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,970,336
Number of Sequences: 27780
Number of extensions: 193693
Number of successful extensions: 460
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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