Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0671.Seq
         (449 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   1.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   1.2  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              23   1.5  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              21   4.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   4.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   6.2  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 194 IEAIFSVKLPENWNGQRTESIRRYCTC 114
           + A+ + K+PEN+N  +      Y TC
Sbjct: 690 VYAVKTRKIPENFNESKFIGFTMYTTC 716


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 194 IEAIFSVKLPENWNGQRTESIRRYCTC 114
           + A+ + K+PEN+N  +      Y TC
Sbjct: 780 VYAVKTRKIPENFNESKFIGFTMYTTC 806


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 101 GVAMGMYNTDESIRSFAH 154
           G+  G Y+ DE +++F H
Sbjct: 94  GIIEGQYHDDEDLKTFFH 111


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 12/40 (30%), Positives = 16/40 (40%)
 Frame = +3

Query: 120 TIPTNRFGPLPIPVFR*LYRKNGLYTCLXKNTILKRYDGR 239
           T P  +    P+P      R NG      +  +LK  DGR
Sbjct: 25  TTPRRKKNKKPLPTECVFCRNNGEEEAYYRKHLLKDADGR 64


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -1

Query: 194 IEAIFSVKLPENWNGQRTESIRRYCTC 114
           + A+ + K+PE +N  +      Y TC
Sbjct: 832 VYAVLTRKIPEAFNESKHIGFTMYTTC 858


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -2

Query: 163 KTGMGKGP 140
           KTG+GKGP
Sbjct: 562 KTGLGKGP 569


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,542
Number of Sequences: 438
Number of extensions: 2664
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)