Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0670.Seq
         (429 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2DRG6 Cluster: Putative uncharacterized protein; n=2; ...    34   1.1  
UniRef50_Q54RH9 Cluster: Putative uncharacterized protein; n=1; ...    33   1.9  
UniRef50_UPI0000D56375 Cluster: PREDICTED: hypothetical protein;...    33   2.5  
UniRef50_A0CM39 Cluster: Chromosome undetermined scaffold_21, wh...    33   3.3  
UniRef50_Q1AGV9 Cluster: Lysine-rich matrix protein-2; n=3; Pinc...    32   4.4  
UniRef50_UPI0000DD81B0 Cluster: PREDICTED: similar to Myeloid/ly...    31   7.7  
UniRef50_A3N6N0 Cluster: Putative uncharacterized protein; n=4; ...    31   7.7  
UniRef50_Q4E4T0 Cluster: Putative uncharacterized protein; n=1; ...    31   7.7  
UniRef50_A7SM33 Cluster: Predicted protein; n=1; Nematostella ve...    31   7.7  

>UniRef50_A2DRG6 Cluster: Putative uncharacterized protein; n=2;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 472

 Score = 34.3 bits (75), Expect = 1.1
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
 Frame = -2

Query: 230 WNCIHKCCCRRMFWILXCLSLNQCYWNCRWSIHF---HHDSWNCLH 102
           W C   CCC+  + +     LN+  + C W   F    H S NC H
Sbjct: 286 WACCFFCCCKGNYTLFGNFYLNRPNYRCYWGDCFGFCTHGSCNCTH 331


>UniRef50_Q54RH9 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 1256

 Score = 33.5 bits (73), Expect = 1.9
 Identities = 20/68 (29%), Positives = 29/68 (42%)
 Frame = +3

Query: 168 QTQTXQDPEHPAAAALMDTVPTVVMEVYHHRQYQXH*FKLKQCRIQYIRWLQHLWIQFQQ 347
           Q Q  Q P  P  A L    P  V +    +Q Q   F     +IQY++ LQ   +Q  Q
Sbjct: 20  QQQQQQQPPTPQQAQLQQIQPQQVQQTQQGQQQQQQPFNQTLQQIQYLKQLQQHLVQTLQ 79

Query: 348 XXMEVYHP 371
             ++ + P
Sbjct: 80  QNIKNFSP 87


>UniRef50_UPI0000D56375 Cluster: PREDICTED: hypothetical protein;
           n=1; Tribolium castaneum|Rep: PREDICTED: hypothetical
           protein - Tribolium castaneum
          Length = 469

 Score = 33.1 bits (72), Expect = 2.5
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
 Frame = +3

Query: 30  PAVPVTLIRIQTA*DPGNPAVAALMKTVPRV-VMKMYRPPTVPVTLIQTQT-XQDPEHPA 203
           P  P T+++ Q   +   P V  +    P V ++K Y PP  PV ++Q     Q  + P 
Sbjct: 81  PYPPATIVQPQIVEEIKTPVVTEIHYNAPAVDIVKPY-PPAAPVEVVQPVVHEQVAQFPY 139

Query: 204 AAALMDTVPTVVME 245
            AA+++ +  +V E
Sbjct: 140 PAAVVEEIQPIVTE 153


>UniRef50_A0CM39 Cluster: Chromosome undetermined scaffold_21, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_21,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 270

 Score = 32.7 bits (71), Expect = 3.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 230 WNCIHKCCCRRMFWILXCLSLNQCYW 153
           W  + +C C+++FW   CL L  C+W
Sbjct: 17  WQLVARCTCQQLFWEEECL-LGGCFW 41


>UniRef50_Q1AGV9 Cluster: Lysine-rich matrix protein-2; n=3;
           Pinctada fucata|Rep: Lysine-rich matrix protein-2 -
           Pinctada fucata (Pearl oyster)
          Length = 101

 Score = 32.3 bits (70), Expect = 4.4
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = -2

Query: 173 SLNQCYWNCRWSIHFHHD-SWNCLHESCYRRISWILRCLNSNQCY 42
           +LN C+W  +W +   H   W C  + CY +  W L     +  Y
Sbjct: 26  NLNICWWKLKWCLKKCHPWDWKC-KKKCYWKYKWCLHKFGGHYPY 69


>UniRef50_UPI0000DD81B0 Cluster: PREDICTED: similar to
           Myeloid/lymphoid or mixed-lineage leukemia protein 2
           (ALL1-related protein); n=2; Homo sapiens|Rep:
           PREDICTED: similar to Myeloid/lymphoid or mixed-lineage
           leukemia protein 2 (ALL1-related protein) - Homo sapiens
          Length = 503

 Score = 31.5 bits (68), Expect = 7.7
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = +3

Query: 75  PGNPAVAALMKTVPRVVMKMYRPPTVPVTLIQTQTXQDPEHPAAAALMDTVPTVVMEVYH 254
           P +PA + L  ++PRV+  + R P  P+  +       P  PA++ L   +P V+  V  
Sbjct: 124 PASPASSPLCPSIPRVLSPVSRHPPRPLPCV-------PASPASSPLCPGIPRVLSPVSR 176

Query: 255 H 257
           H
Sbjct: 177 H 177


>UniRef50_A3N6N0 Cluster: Putative uncharacterized protein; n=4;
           Burkholderia|Rep: Putative uncharacterized protein -
           Burkholderia pseudomallei (strain 668)
          Length = 755

 Score = 31.5 bits (68), Expect = 7.7
 Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 1/67 (1%)
 Frame = -2

Query: 230 WNCIHKCCCRRMFWILXCLSLNQCYWNC-RWSIHFHHDSWNCLHESCYRRISWILRCLNS 54
           W    + C RR  +   C       W C RW  +F      C    C+RR  +  +C   
Sbjct: 509 WRYFGRRCFRRRCFRRRCFRRRYFRWRCFRWR-YFGR---RCFRRRCFRRRRFRRQCFRR 564

Query: 53  NQCYWNC 33
            +  W C
Sbjct: 565 RRFRWRC 571


>UniRef50_Q4E4T0 Cluster: Putative uncharacterized protein; n=1;
           Trypanosoma cruzi|Rep: Putative uncharacterized protein
           - Trypanosoma cruzi
          Length = 598

 Score = 31.5 bits (68), Expect = 7.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 110 CLHESCYRRISWILRCLNSNQCYWNC 33
           C H  C+  +S++L C  +  CYWNC
Sbjct: 430 CQHLQCFDCLSFLLSC--NKGCYWNC 453


>UniRef50_A7SM33 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 220

 Score = 31.5 bits (68), Expect = 7.7
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
 Frame = -2

Query: 266 VLPVMIHFHHDCWNCIHKCC-CRRMFWILXCLSLNQCYWNCRWS----IHFHHDSWNCLH 102
           V+ + +H  H    CI  C  CRR+   L C         CR+     + F H +W  L+
Sbjct: 96  VVSLCVHCVHAVI-CIGLCTECRRVVINLVCAGHMNVVCACRYVHSAWVFFLHSAWVSLY 154

Query: 101 ESCYRRISWILRCL 60
             C R +   +RC+
Sbjct: 155 IQCVRNVMCSVRCV 168


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 299,903,360
Number of Sequences: 1657284
Number of extensions: 4948744
Number of successful extensions: 14319
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14288
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 20653970351
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)