Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0670.Seq
         (429 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    26   2.2  
SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar...    25   3.8  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    25   6.6  
SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Ma...    24   8.7  

>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -3

Query: 136 YIFITTLGTVFMRAATAGFPGSYAV*IRISVTGTAGR*YISIMT 5
           YI  TT+ T  +   T G+ G+    + +  TGT G   + I T
Sbjct: 787 YIIPTTIVTGTVTTVTTGYTGTETSTVTVIPTGTTGTTTVVIQT 830


>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 232

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 236 DCWNCIHKCCCRRMFWILXCLSLNQCYWN 150
           DC  C+H  CC+ +  +  C++ N  + N
Sbjct: 198 DCGYCLHVYCCKHLAHV-NCINCNTPWAN 225


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 10/46 (21%), Positives = 22/46 (47%)
 Frame = +3

Query: 201 AAAALMDTVPTVVMEVYHHRQYQXH*FKLKQCRIQYIRWLQHLWIQ 338
           A++   + +  +  + YH   Y     ++  C   Y +W Q+L++Q
Sbjct: 122 ASSWTYENIKKMKEQTYHMNIYFDWDREISTCNPDYYKWSQYLFLQ 167


>SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 131 FHHDSWNCLHESCYRRISWIL 69
           F+HD  NC+H S   +I  +L
Sbjct: 263 FYHDDTNCIHLSRLEKIRELL 283


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,254,362
Number of Sequences: 5004
Number of extensions: 21307
Number of successful extensions: 65
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)