Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0670.Seq
         (429 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0187 + 32209924-32210634                                         31   0.52 
09_06_0354 - 22490833-22491417                                         27   4.9  
01_06_0709 - 31367152-31367532,31367762-31368035,31368474-31370557     27   6.4  

>03_06_0187 + 32209924-32210634
          Length = 236

 Score = 30.7 bits (66), Expect = 0.52
 Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +3

Query: 27  LPAVPVTLIRIQTA*DPGNPAVAALMKTVPRVVMKMYRPPTVP-VTLIQTQTXQDPEHPA 203
           +PAV  T+  I T   PG PAV   + T+P V       PT+P V  +       P  P 
Sbjct: 46  VPAVGPTIPAIPTI--PGVPAVGPTIPTIPTV-------PTIPGVPAVGPTIPAIPTIPG 96

Query: 204 AAALMDTVPTV 236
             A+  T+PT+
Sbjct: 97  VPAVGPTIPTI 107


>09_06_0354 - 22490833-22491417
          Length = 194

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 147 TVPVTLIQTQTXQDPEHPAAAA 212
           T PV  +Q+Q  QDP  P AAA
Sbjct: 60  TPPVVPLQSQETQDPNEPKAAA 81


>01_06_0709 - 31367152-31367532,31367762-31368035,31368474-31370557
          Length = 912

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 129 KMYRPPTVPVTLIQTQTXQDPEHPAAAALMDTVPTVV 239
           +M R  TVP TL +     D EH A  ++   VP+ V
Sbjct: 38  RMSRVMTVPGTLSELDGEDDSEHAATNSVASDVPSSV 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,401,648
Number of Sequences: 37544
Number of extensions: 148050
Number of successful extensions: 359
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 358
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)