Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0670.Seq
(429 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23154| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_27470| Best HMM Match : Baculo_PEP_C (HMM E-Value=2.8) 29 1.6
SB_32688| Best HMM Match : PAZ (HMM E-Value=7.7) 27 5.0
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) 27 5.0
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_33344| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_4686| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
>SB_23154| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1051
Score = 29.1 bits (62), Expect = 1.6
Identities = 24/85 (28%), Positives = 40/85 (47%)
Frame = +3
Query: 3 TVMMEMYHLPAVPVTLIRIQTA*DPGNPAVAALMKTVPRVVMKMYRPPTVPVTLIQTQTX 182
+++ + H A+ VT+ R T P + AL+ T+PR MK + I T
Sbjct: 486 SLLPQRNHSIALLVTIPR-HTMKQPNHSI--ALLVTIPRHTMKQPNHSIALLVTIPRHTM 542
Query: 183 QDPEHPAAAALMDTVPTVVMEVYHH 257
+ P H + AL+ T+P M+ +H
Sbjct: 543 KQPNH--SIALLVTIPRHPMKQRNH 565
>SB_27470| Best HMM Match : Baculo_PEP_C (HMM E-Value=2.8)
Length = 627
Score = 29.1 bits (62), Expect = 1.6
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Frame = +3
Query: 39 PVTLIRIQTA*DPGNPAVAALMKTVPRVVMKMYRPPTVPV---TLIQTQTXQDPEHPAAA 209
P TL R+ T D P V + T+PRVV ++ P V TL + T D P
Sbjct: 194 PDTLPRVVTCLDT-LPRVGTRLDTLPRVVTRLDTLPRVVTRLDTLPRVVTRLD-TLPRVV 251
Query: 210 ALMDTVPTVV 239
+DT+P VV
Sbjct: 252 TRLDTLPRVV 261
Score = 27.5 bits (58), Expect = 5.0
Identities = 19/65 (29%), Positives = 29/65 (44%)
Frame = +3
Query: 45 TLIRIQTA*DPGNPAVAALMKTVPRVVMKMYRPPTVPVTLIQTQTXQDPEHPAAAALMDT 224
TL R+ T D P V + T+PRVV ++ P + + + P +DT
Sbjct: 236 TLPRVVTRLDT-LPRVVTRLDTLPRVVTRLDTLPRTRLDTLPRVVTRLDTLPRVVTRLDT 294
Query: 225 VPTVV 239
+P VV
Sbjct: 295 LPRVV 299
Score = 27.5 bits (58), Expect = 5.0
Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +3
Query: 45 TLIRIQTA*DPGNPAVAALMKTVPRVVMKMYRPPTVPV---TLIQTQTXQDPEHPAAAAL 215
TL RI T D P V + T+PRVV ++ P V TL + T D P
Sbjct: 364 TLPRIVTRLDT-LPRVGTRLDTLPRVVTRLDTLPRVVTRLDTLPRVGTRLD-TLPRVVTR 421
Query: 216 MDTVPTVV 239
+DT+P VV
Sbjct: 422 LDTLPRVV 429
Score = 27.1 bits (57), Expect = 6.6
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +3
Query: 45 TLIRIQTA*DPGNPAVAALMKTVPRVVMKMYRPPTVPV---TLIQTQTXQDPEHPAAAAL 215
TL R+ T D P V + T+PR+V ++ P V TL + T D P
Sbjct: 294 TLPRVVTCLDT-LPRVGTRLDTLPRIVTRLDTLPRVVTRLDTLPRVGTRLD-TLPRVVTR 351
Query: 216 MDTVPTVV 239
+DT+P VV
Sbjct: 352 LDTLPRVV 359
Score = 27.1 bits (57), Expect = 6.6
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +3
Query: 45 TLIRIQTA*DPGNPAVAALMKTVPRVVMKMYRPPTVPV---TLIQTQTXQDPEHPAAAAL 215
TL R+ T D P V + T+PRVV ++ P V TL + T D P
Sbjct: 474 TLQRVVTRLDT-LPRVVTRLDTLPRVVTRLDTLPRVVTRLDTLPRVGTRLD-TLPRVVTR 531
Query: 216 MDTVPTVV 239
+DT+P VV
Sbjct: 532 LDTLPRVV 539
Score = 27.1 bits (57), Expect = 6.6
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +3
Query: 45 TLIRIQTA*DPGNPAVAALMKTVPRVVMKMYRPPTVPV---TLIQTQTXQDPEHPAAAAL 215
TL R+ T D P V + T+PRVV ++ P V TL + T D P
Sbjct: 504 TLPRVVTRLDT-LPRVGTRLDTLPRVVTRLDTLPRVVTRLDTLPRVVTRLD-TLPRVVTR 561
Query: 216 MDTVPTVV 239
+DT+P VV
Sbjct: 562 LDTLPRVV 569
Score = 27.1 bits (57), Expect = 6.6
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +3
Query: 45 TLIRIQTA*DPGNPAVAALMKTVPRVVMKMYRPPTVPV---TLIQTQTXQDPEHPAAAAL 215
TL R+ T D P V + T+PRVV ++ P V TL + T D P
Sbjct: 534 TLPRVVTRLDT-LPRVVTRLDTLPRVVTRLDTLPRVVTRLDTLPRVGTRLD-TLPRVVTR 591
Query: 216 MDTVPTVV 239
+DT+P VV
Sbjct: 592 LDTLPRVV 599
Score = 26.6 bits (56), Expect = 8.7
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +3
Query: 45 TLIRIQTA*DPGNPAVAALMKTVPRVVMKMYRPPTVPV---TLIQTQTXQDPEHPAAAAL 215
TL R+ T D P V + T+PRVV ++ P V TL + T D P
Sbjct: 324 TLPRVVTRLDT-LPRVGTRLDTLPRVVTRLDTLPRVVTRLDTLPRIVTRLD-TLPRVGTR 381
Query: 216 MDTVPTVV 239
+DT+P VV
Sbjct: 382 LDTLPRVV 389
>SB_32688| Best HMM Match : PAZ (HMM E-Value=7.7)
Length = 665
Score = 27.5 bits (58), Expect = 5.0
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +3
Query: 96 ALMKTVPRVVMKMYRPPTVPVTLIQTQTXQDPEHPAAAALMDTVPTVVMEVYHH 257
AL+ T+PR MK + I T + P H + AL+ ++P M+ +H
Sbjct: 81 ALLVTIPRHTMKQRNHLIALLVTIPRHTMKQPNH--SIALLVSIPRHTMKQRNH 132
Score = 27.1 bits (57), Expect = 6.6
Identities = 22/83 (26%), Positives = 36/83 (43%)
Frame = +3
Query: 9 MMEMYHLPAVPVTLIRIQTA*DPGNPAVAALMKTVPRVVMKMYRPPTVPVTLIQTQTXQD 188
M + H A+ VT+ R T N ++A L++T+P MK + I T +
Sbjct: 412 MKQRNHSIALLVTISRHTTK--QRNHSIA-LLETIPHHTMKQRNHSIALLVTISRHTTKQ 468
Query: 189 PEHPAAAALMDTVPTVVMEVYHH 257
P H + T+P M+ +H
Sbjct: 469 PNHSITPLV--TIPRHTMKQRYH 489
>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
Length = 612
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = -2
Query: 242 HHDCWNCIHKCC-CRRMFWILXCLSLNQCYWNCRWSIHFHHDSWNCLHESCYR 87
H+ C+ H CC C + C + Y C + H+H+ + + CYR
Sbjct: 13 HNRCYRHHHYCCYCHHRY----CYYRHHHY--CWYRHHYHYPCYRHYYHRCYR 59
>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +3
Query: 144 PTVPVTLIQTQTXQDPEHPAAAALMDTVPT 233
PT P + TQT P P+ A T PT
Sbjct: 41 PTTPTSTAPTQTTPTPTTPSPTAPTQTTPT 70
>SB_33344| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 331
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -2
Query: 167 NQCYWNCRWSIHFHHDSWNCLHESCYRRISWILRCLNSNQCY 42
NQCY + + D L CY ++ + +C NQCY
Sbjct: 256 NQCYLDLALDDQCYLDL--ALDNQCYLDLALVSQCYLDNQCY 295
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Frame = -2
Query: 179 CLSL---NQCYWNCRWSIHFHHDSWNCLHESCYRRISWILRCLNSNQCY 42
CL L NQCY + D L CY ++ + +C NQCY
Sbjct: 20 CLDLALDNQCYLELALDNQCYLDL--ALVSQCYLDLALVSQCYLDNQCY 66
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 26.6 bits (56), Expect = 8.7
Identities = 19/54 (35%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Frame = +3
Query: 108 TVPRVVMKMYRPPTVPVTLIQTQTXQDPEHPAAAALMDTVPTVVM---EVYHHR 260
T P V P T P T QT T A A T P V +VYH+R
Sbjct: 6109 TEPPVTTPTTAPTTTPPTTKQTTTQLPATTKAPTATKPTTPQSVCLPGDVYHNR 6162
>SB_4686| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 641
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/59 (27%), Positives = 20/59 (33%)
Frame = -2
Query: 212 CCCRRMFWILXCLSLNQCYWNCRWSIHFHHDSWNCLHESCYRRISWILRCLNSNQCYWN 36
CC M L C+ LN N W + F + YR N+ YWN
Sbjct: 127 CCTNMMTITLYCIQLNLTKANNHWHLGFFTKEYT----PVYRGFDSFYGFWNAKTDYWN 181
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,507,900
Number of Sequences: 59808
Number of extensions: 171911
Number of successful extensions: 452
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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