Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0670.Seq
         (429 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic acetylch...    23   3.5  
AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic acetylch...    23   3.5  
AJ618922-1|CAF02001.1|  272|Anopheles gambiae odorant-binding pr...    23   3.5  

>AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +3

Query: 225 VPTVVMEVYHHRQYQXH*FK--LKQCRIQYIRWL 320
           V TVV+  YHHR    H     +K   +Q++ W+
Sbjct: 310 VLTVVVLNYHHRTADIHEMPPWIKSVFLQWLPWI 343


>AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +3

Query: 225 VPTVVMEVYHHRQYQXH*FK--LKQCRIQYIRWL 320
           V TVV+  YHHR    H     +K   +Q++ W+
Sbjct: 310 VLTVVVLNYHHRTADIHEMPPWIKSVFLQWLPWI 343


>AJ618922-1|CAF02001.1|  272|Anopheles gambiae odorant-binding
           protein OBPjj5a protein.
          Length = 272

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 152 NCRWSIHFHHDSWNCLHESCYRR 84
           NCR +   +H S N    +CY++
Sbjct: 151 NCRTAARRNHSSRNTCRRNCYQQ 173


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 337,601
Number of Sequences: 2352
Number of extensions: 5697
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 35292513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)