Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0670.Seq
         (429 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024785-3|AAF60597.2|  456|Caenorhabditis elegans Hypothetical ...    31   0.35 
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr...    29   1.1  
Z82083-3|CAB04971.1|  756|Caenorhabditis elegans Hypothetical pr...    27   5.7  
AC006695-8|AAF39976.1|  351|Caenorhabditis elegans Hypothetical ...    27   5.7  
AF016432-8|AAB65377.1|  351|Caenorhabditis elegans Seven tm rece...    27   7.5  
Z81502-2|CAB04106.2|  720|Caenorhabditis elegans Hypothetical pr...    26   10.0 

>AC024785-3|AAF60597.2|  456|Caenorhabditis elegans Hypothetical
           protein Y46C8AL.2 protein.
          Length = 456

 Score = 31.1 bits (67), Expect = 0.35
 Identities = 21/77 (27%), Positives = 26/77 (33%)
 Frame = +3

Query: 3   TVMMEMYHLPAVPVTLIRIQTA*DPGNPAVAALMKTVPRVVMKMYRPPTVPVTLIQTQTX 182
           T    M   P  P T   +++   P  P     MK+ P     M   PT P T   T   
Sbjct: 251 TTPTTMKSTPTTPTTPTTMKST--PTTPTTPTTMKSTPTTPTTMKSTPTTPTT--PTTMK 306

Query: 183 QDPEHPAAAALMDTVPT 233
             P  P     M + PT
Sbjct: 307 STPTTPTTPTTMKSTPT 323



 Score = 28.3 bits (60), Expect = 2.5
 Identities = 20/79 (25%), Positives = 26/79 (32%)
 Frame = +3

Query: 3   TVMMEMYHLPAVPVTLIRIQTA*DPGNPAVAALMKTVPRVVMKMYRPPTVPVTLIQTQTX 182
           T    M   P  P T   +++   P  P     MK+ P     M   PT P T   T   
Sbjct: 365 TTPTTMKSTPTTPTTPTTMKST--PTTPTTPTTMKSTPTTPTTMKSTPTTPTT--PTTMK 420

Query: 183 QDPEHPAAAALMDTVPTVV 239
             P  P       T P+ +
Sbjct: 421 STPTTPTTMKSTPTTPSTM 439


>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical protein
            F40H6.5 protein.
          Length = 1288

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = +3

Query: 90   VAALMKTVPRVVMKMYRPPTVPVTLIQTQTXQDPEHPAAAALMDT 224
            +A    T+  V M   RPPT P T   T T   P+    + L  T
Sbjct: 1135 IAYRESTIDTVSMACVRPPTTPTTTTSTTTTTTPKLTTTSTLPST 1179


>Z82083-3|CAB04971.1|  756|Caenorhabditis elegans Hypothetical
           protein ZK1010.5 protein.
          Length = 756

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 141 PPTVPVTLIQTQTXQDPEHPAAAALMDTVPTVVM 242
           P  +PV  +   T Q+P    AA +M   P VV+
Sbjct: 334 PTDLPVVFVDPATSQEPNDTTAAPVMPPNPPVVI 367



 Score = 27.1 bits (57), Expect = 5.7
 Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 14/85 (16%)
 Frame = +3

Query: 30  PAVPVTLIRIQTA*DPGNPAVAALMKTVPRVVM--------------KMYRPPTVPVTLI 167
           P  PV ++   T+ +P +  VA +M   P VV+                  PP  PV + 
Sbjct: 465 PNPPVVIVDPATSEEPNDTTVAQVMPPNPPVVIVDPATSEEPNDTTVAQVMPPNPPVVIS 524

Query: 168 QTQTXQDPEHPAAAALMDTVPTVVM 242
              T +DP    +  ++ T P VV+
Sbjct: 525 GPATAKDPSTTTSDPVVQTNPPVVI 549


>AC006695-8|AAF39976.1|  351|Caenorhabditis elegans Hypothetical
           protein W06H8.4 protein.
          Length = 351

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +3

Query: 75  PGNPAVAALMKTVPRVVMKMYRPPTVPVTLIQTQTXQDPEHPAAAALMDT 224
           P  PAV++  KT P   +K   P T   +    +  +DP  P  + L  T
Sbjct: 37  PTRPAVSSTSKTTPHTTLK---PRTTKKSTASNKERKDPNCPFGSPLKPT 83


>AF016432-8|AAB65377.1|  351|Caenorhabditis elegans Seven tm
           receptor protein 227 protein.
          Length = 351

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = -2

Query: 296 ALFE-FESVXLVLPVMIHFHHDCWNCIHKCCCRRMFWILXCLSLNQCYWNC 147
           ++FE F S+  V+ V  H+ H     +      ++F     L LN CYW C
Sbjct: 51  SVFEIFYSILDVVLVPQHYSHGPTFLVIVGLKDKLFGPAGLLILNSCYWGC 101


>Z81502-2|CAB04106.2|  720|Caenorhabditis elegans Hypothetical
           protein F14B6.2 protein.
          Length = 720

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 296 ALFEFESVXLVLPVMIHFHHDCWNCIHKCCCR 201
           +LFEF  V  V+ +++  +       ++CCCR
Sbjct: 667 SLFEFLLVAFVIDIVLILYAIVVGIAYRCCCR 698


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,120,700
Number of Sequences: 27780
Number of extensions: 128935
Number of successful extensions: 463
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)