Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0670.Seq
         (429 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    27   0.12 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    27   0.12 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    27   0.12 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    27   0.12 
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   2.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   2.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   2.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   3.3  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            22   3.3  

>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 26.6 bits (56), Expect = 0.12
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = -2

Query: 233 CWNCIHKCCCRRMFWILXCLS-LNQCYW 153
           C NCIH      +FW+  C S +N C +
Sbjct: 35  CRNCIHPTVFSVLFWLGYCNSAINPCIY 62



 Score = 26.2 bits (55), Expect = 0.16
 Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -3

Query: 346 CWNCIHKCCNHRMYWILHCLS-LNQCXW 266
           C NCIH      ++W+ +C S +N C +
Sbjct: 35  CRNCIHPTVFSVLFWLGYCNSAINPCIY 62


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 26.6 bits (56), Expect = 0.12
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = -2

Query: 233 CWNCIHKCCCRRMFWILXCLS-LNQCYW 153
           C NCIH      +FW+  C S +N C +
Sbjct: 483 CRNCIHPTVFSVLFWLGYCNSAINPCIY 510



 Score = 26.2 bits (55), Expect = 0.16
 Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -3

Query: 346 CWNCIHKCCNHRMYWILHCLS-LNQCXW 266
           C NCIH      ++W+ +C S +N C +
Sbjct: 483 CRNCIHPTVFSVLFWLGYCNSAINPCIY 510


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 26.6 bits (56), Expect = 0.12
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +3

Query: 36   VPVTLIRIQTA*D-PGNPAVAALMKTVPRVVMKMYRPPTVPVTLI 167
            VP T+   QT  D PG+PA   ++ + P+ +   + PP  P  +I
Sbjct: 1200 VPTTVTYCQTEEDVPGSPADIKVVVSSPQALFISWLPPLEPNGII 1244


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 26.6 bits (56), Expect = 0.12
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +3

Query: 36   VPVTLIRIQTA*D-PGNPAVAALMKTVPRVVMKMYRPPTVPVTLI 167
            VP T+   QT  D PG+PA   ++ + P+ +   + PP  P  +I
Sbjct: 1196 VPTTVTYCQTEEDVPGSPADIKVVVSSPQALFISWLPPLEPNGII 1240


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 334 IHKCCNHRMYWILHCLSL 281
           IH C + R YW L C+ L
Sbjct: 81  IHPCSSFRFYWDL-CMLL 97


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 334 IHKCCNHRMYWILHCLSL 281
           IH C + R YW L C+ L
Sbjct: 81  IHPCSSFRFYWDL-CMLL 97


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 334 IHKCCNHRMYWILHCLSL 281
           IH C + R YW L C+ L
Sbjct: 81  IHPCSSFRFYWDL-CMLL 97


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +3

Query: 225 VPTVVMEVYHHRQYQXH*FKLKQCRIQYIRWL 320
           V T+++  YHHR    H    +  ++ ++ WL
Sbjct: 310 VSTILILNYHHRNADTHEMS-EWVKVVFLYWL 340


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +3

Query: 240 MEVYHHRQYQXH 275
           +E+YHH+ +Q H
Sbjct: 61  IELYHHKFFQVH 72


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,650
Number of Sequences: 438
Number of extensions: 1464
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11121030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)