Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0670.Seq
         (429 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g14920.1 68418.m01750 gibberellin-regulated family protein si...    28   2.3  
At4g30825.1 68417.m04371 pentatricopeptide (PPR) repeat-containi...    27   7.1  
At3g61670.1 68416.m06911 expressed protein weak similarity to ex...    27   7.1  
At5g17780.1 68418.m02085 hydrolase, alpha/beta fold family prote...    26   9.4  
At1g13970.1 68414.m01645 expressed protein                             26   9.4  

>At5g14920.1 68418.m01750 gibberellin-regulated family protein
           similar to SP|P46689 Gibberellin-regulated protein 1
           precursor {Arabidopsis thaliana}; contains Pfam profile
           PF02704: Gibberellin regulated protein
          Length = 275

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 135 YRPPTVPVTLIQTQTXQDPEHPAAAALMDTVPTV 236
           Y+PPT+P T I+  T + P  P    +    P V
Sbjct: 59  YKPPTLPTTPIKPPTTKPPVKPPTIPVTPVKPPV 92



 Score = 27.5 bits (58), Expect = 4.1
 Identities = 14/41 (34%), Positives = 16/41 (39%)
 Frame = +3

Query: 108 TVPRVVMKMYRPPTVPVTLIQTQTXQDPEHPAAAALMDTVP 230
           T P V    Y PPT PV        + P  P     +D VP
Sbjct: 178 TTPPVQPPTYNPPTTPVKPPTAPPVKPPTPPPVRTRIDCVP 218


>At4g30825.1 68417.m04371 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 904

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -2

Query: 251 IHFHHDCWNCIHKCCCRRM 195
           IH++ + +NC+  CC R +
Sbjct: 660 IHWNQEMYNCVINCCARAL 678


>At3g61670.1 68416.m06911 expressed protein weak similarity to
           extra-large G-protein [Arabidopsis thaliana] GI:3201682
          Length = 790

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 134 HFHHDSWNCLHESCYRRISW 75
           HFHH S +C H  CY    W
Sbjct: 322 HFHHSSCSCYH--CYDNKYW 339


>At5g17780.1 68418.m02085 hydrolase, alpha/beta fold family protein
           low similarity to SP|Q02104 Lipase 1 precursor (EC
           3.1.1.3) (Triacylglycerol lipase) {Psychrobacter
           immobilis}, SP|P27747|ACOC_ALCEU Dihydrolipoamide
           acetyltransferase component of acetoin cleaving system
           (EC 2.3.1.12) [Ralstonia eutropha] {Alcaligenes
           eutrophus}; contains Pfam profile PF00561: hydrolase,
           alpha/beta fold family
          Length = 417

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 8/32 (25%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -2

Query: 191 WILX-CLSLNQCYWNCR-WSIHFHHDSWNCLH 102
           W++  C+   + +W  +  + H HH +W+ +H
Sbjct: 304 WLIKLCIGKREIHWKIKDITRHTHHSAWHSMH 335


>At1g13970.1 68414.m01645 expressed protein
          Length = 504

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = -2

Query: 248 HFHHDCWNCIHKCCCRRMFWILXCLSLNQCYWNC 147
           + H D  NC  K  C+R         L Q  WNC
Sbjct: 57  YVHLDFDNCAAKMMCKRAEMSNANFHLTQLQWNC 90


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,604,872
Number of Sequences: 28952
Number of extensions: 112095
Number of successful extensions: 306
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)