Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0667.Seq
         (439 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    27   1.7  
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    26   2.9  
SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   5.1  
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    24   8.9  

>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +2

Query: 221 GRSQPSRIRQGLLTVEPRESGGSKQCDFTSRRFAFKTRDATSKPI 355
           G +QP R+     ++  +  G SK      R+F  KTR   SKP+
Sbjct: 214 GINQPVRVCDSCYSLRTKPKG-SKSRARNERKFHAKTRKTPSKPV 257


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
 Frame = -1

Query: 427 SGTXGA--VMHVLRXNXPIASIAA---DPNGLRRRVSRFECETAT 308
           SGT  A     V   + P+AS  A   DPN   ++V ++ CET T
Sbjct: 32  SGTSNANTPSSVTSNSKPVASSTAAKKDPNAPPQKVKQYVCETCT 76


>SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 148

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +3

Query: 72  LIFKSVTFMVVSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNAXK 221
           L+ +  T   +   A  +  +S G +VHA  RAA    +  A  CL   K
Sbjct: 45  LVSEPKTIPCLHRCAFLDLTKSRGRVVHACSRAALPRAIADASHCLEEKK 94


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 3   RPMLRFVSHTPKPSALNAALLQGLIFKSVTFMVVS 107
           RP++  + H     ALN   L GL   ++  +VVS
Sbjct: 382 RPLVIIIKHFLNMRALNEVFLGGLSSYAIVCLVVS 416


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,601,273
Number of Sequences: 5004
Number of extensions: 27623
Number of successful extensions: 64
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)