Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0667.Seq
(439 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0731 - 6060680-6060982 31 0.31
09_02_0018 + 3016137-3016186,3016529-3016776,3018717-3018811,302... 30 0.71
03_06_0197 - 32271760-32271922,32272134-32272303 30 0.93
06_03_0191 - 17720512-17721435,17721718-17721843,17721940-177221... 29 1.2
07_03_0626 + 20060013-20060273,20061017-20061274 29 2.2
02_05_0695 + 30990070-30990269,30990399-30990459,30990793-309910... 29 2.2
02_01_0083 - 566201-567127,567223-567464,567623-567880,568173-56... 28 2.9
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581 27 5.0
04_03_1018 + 21753634-21753640,21754282-21754315,21754413-217544... 27 5.0
03_06_0003 + 30921197-30921388,30921514-30921632,30921742-309218... 27 5.0
12_01_0672 + 5731288-5731356,5732032-5732117,5732634-5732724,573... 27 6.6
04_03_0046 + 10114402-10114535,10116438-10117365 27 6.6
10_06_0105 - 10790092-10790323,10791092-10791234,10791322-107914... 27 8.7
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28... 27 8.7
04_04_0873 - 28905240-28906061 27 8.7
02_04_0564 + 23905196-23905413,23905631-23905766,23906005-239060... 27 8.7
02_02_0277 + 8489717-8491468,8491571-8491610,8491719-8491841,849... 27 8.7
02_01_0486 - 3495792-3496034,3496862-3496934,3497128-3497422,349... 27 8.7
>11_01_0731 - 6060680-6060982
Length = 100
Score = 31.5 bits (68), Expect = 0.31
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +3
Query: 141 GHLVHALGRAAGGAKLPSAGLCLNAXKAEASLAESGKDCSLW 266
G HALG GG + +AG C E ++ G +LW
Sbjct: 8 GSATHALGSDNGGRRAAAAGACDGDVAGEEAMGHGGGGLALW 49
>09_02_0018 +
3016137-3016186,3016529-3016776,3018717-3018811,
3020025-3020330,3021288-3021336,3021436-3021637,
3023364-3023532,3023605-3023634,3023742-3023807,
3025313-3025378,3029404-3029464,3029592-3029719,
3030716-3030757,3031074-3031190,3031280-3031339
Length = 562
Score = 30.3 bits (65), Expect = 0.71
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 85 ASPSWWSVILLSTRGTAVSD 144
+SPSWWSV+++ RG D
Sbjct: 176 SSPSWWSVVMVKARGMGPRD 195
>03_06_0197 - 32271760-32271922,32272134-32272303
Length = 110
Score = 29.9 bits (64), Expect = 0.93
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +2
Query: 179 CEATIRGIMPERL*GRSQPSRIRQGLLTVEPRESGGSK 292
C AT+ G ++L G+ Q + R+G V PRE+GG +
Sbjct: 14 CAATLGG--RQQLAGQGQAAARRRGRAAVRPREAGGQR 49
>06_03_0191 - 17720512-17721435,17721718-17721843,17721940-17722140,
17722189-17722332,17722415-17722722,17723433-17723568,
17723748-17723841,17723976-17724073,17724951-17725004,
17725704-17726150,17726227-17726393,17726540-17726663,
17726751-17726837,17727000-17727056,17727492-17727560,
17727664-17727811,17727893-17728116,17728842-17728958,
17729649-17729742,17730573-17730640,17733278-17733334,
17733412-17733511,17733638-17733674,17734077-17734200,
17735254-17735322,17735371-17735410,17735905-17735993,
17736849-17736953,17737033-17737104,17737814-17737936,
17738049-17738117,17738966-17739059,17739145-17739231,
17740184-17740351,17740436-17740552,17741484-17741590,
17741671-17741803,17742564-17742667,17743504-17743629,
17744148-17744216,17744996-17745064,17745278-17745358,
17745444-17745533,17745896-17746000,17747803-17747873,
17748320-17748461,17749266-17749330,17750081-17750168,
17750236-17750325,17750437-17750673,17751064-17751170,
17751625-17751832,17752376-17752546
Length = 2366
Score = 29.5 bits (63), Expect = 1.2
Identities = 19/97 (19%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Frame = +3
Query: 63 LQGLIFKSVTFMVVSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNAXKAEASLAE 242
+QG +F ++ +++ + + GHL++A+ G P +++ A+L E
Sbjct: 1031 VQGTLFLAMEILLLEENGYVDLRQEIGHLINAIVAVIGPELAPE----ISSSSETATLIE 1086
Query: 243 S---GKDCSLWSPESREALNNVTLLVAVSHSKRETRR 344
S + L++P++ ++V L+ +S++ + R
Sbjct: 1087 SVRFAQQLVLFAPQAVPVHSHVQSLIPTLYSRQPSLR 1123
>07_03_0626 + 20060013-20060273,20061017-20061274
Length = 172
Score = 28.7 bits (61), Expect = 2.2
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -2
Query: 240 RLGWLRPXRRSGIIP 196
RLGWLRP R S ++P
Sbjct: 32 RLGWLRPSRLSAVVP 46
>02_05_0695 +
30990070-30990269,30990399-30990459,30990793-30991001,
30991295-30991382
Length = 185
Score = 28.7 bits (61), Expect = 2.2
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +3
Query: 3 RPMLRFVSHTPKPSALNAALLQGLIFKSVTFMVVSNTAQYERNRSFG 143
R L+F++ TP PS+L ++ L GL+ KS + N A R S G
Sbjct: 47 RQQLQFLTKTPSPSSLPSS-LPGLLGKSPVRPALCNDALLSRFLSTG 92
>02_01_0083 -
566201-567127,567223-567464,567623-567880,568173-568298,
568420-568489
Length = 540
Score = 28.3 bits (60), Expect = 2.9
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +3
Query: 180 AKLPSAGLCLNAXKAEASL-AESGKDCSLWSPESREALNNVT-LLVAVSHSKRE 335
A+LP L + E + A ++C W PESR ++ V +L ++ S R+
Sbjct: 426 AELPDPALQGRFPQEEMQIMAHLARECLQWEPESRPTMSEVVQILATIAPSSRK 479
>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
Length = 311
Score = 27.5 bits (58), Expect = 5.0
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 141 GHLVHALGR-AAGGAKLPSAGLCLNAXKAEASLA 239
G LV L R GG SAG+C + +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236
>04_03_1018 +
21753634-21753640,21754282-21754315,21754413-21754432,
21754485-21755782
Length = 452
Score = 27.5 bits (58), Expect = 5.0
Identities = 21/60 (35%), Positives = 26/60 (43%)
Frame = +3
Query: 156 ALGRAAGGAKLPSAGLCLNAXKAEASLAESGKDCSLWSPESREALNNVTLLVAVSHSKRE 335
ALG A P G CLN K+EASLA +R L + VA + + RE
Sbjct: 206 ALGLMPSSAASPQLG-CLNVLKSEASLASLVALLERGRGRTRAGLCRLLEAVATAAATRE 264
>03_06_0003 +
30921197-30921388,30921514-30921632,30921742-30921811,
30922078-30922161,30922258-30922344,30922431-30922501,
30922648-30922702,30923374-30923509,30925009-30925103,
30925203-30925357,30925435-30925543,30925761-30925817,
30925913-30926027,30926177-30926264,30926738-30927501,
30927600-30927688,30928315-30928422,30928550-30928657,
30928887-30928977,30929235-30929287,30929557-30929712,
30930763-30930825,30931491-30931535,30932075-30932130,
30933051-30933132,30933238-30933354,30933428-30933530,
30933912-30934062,30934180-30934417,30934564-30934764,
30934850-30934935,30935036-30935135
Length = 1347
Score = 27.5 bits (58), Expect = 5.0
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = +3
Query: 246 GKDCSLWSPE--SREALNNVTLLVAVSHSKRETRRRSPFGSAAIDAI 380
G S WSP E L LLV H +++ RR P S+ +++
Sbjct: 671 GFGSSFWSPAVGQSEELRQPALLVQQQHQQQQNSRRKPSVSSVPESV 717
>12_01_0672 + 5731288-5731356,5732032-5732117,5732634-5732724,
5732886-5732935,5733339-5733408,5733508-5733617,
5733943-5734463,5734856-5734949,5735095-5735225,
5735241-5736274,5736383-5736457,5736615-5737104,
5737375-5738009,5738166-5738378
Length = 1222
Score = 27.1 bits (57), Expect = 6.6
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Frame = +3
Query: 174 GGAK---LPSAGLCLNAXKAEASLAESGKDCS---LWSPESREALNNVTL 305
GGAK +P++ LC ++ +A +S E KD L S E R NN L
Sbjct: 1061 GGAKEVKVPASDLCNHSCQANSSPTEGKKDSKIPILDSTEDRSCSNNAEL 1110
>04_03_0046 + 10114402-10114535,10116438-10117365
Length = 353
Score = 27.1 bits (57), Expect = 6.6
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 6 PMLRFVSHTPKPSALNAALLQGLIFKSVTFMVVSNTAQYERNRSFGHLVHALGR 167
P+++++ P P ALN AL Q + + V F + E+ F +V ++GR
Sbjct: 278 PLMKWLFCQPNPIALNTALAQLGVVRPV-FRLPYVPLPLEKRVEFVRIVESIGR 330
>10_06_0105 -
10790092-10790323,10791092-10791234,10791322-10791429,
10791796-10791903,10793133-10797686,10798347-10798461,
10799597-10799724,10799843-10800043,10800158-10800227,
10801233-10801314,10801433-10801556,10801761-10801778
Length = 1960
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 204 IIPRMVASHHRPLGRVHEPNVRNCGSSRT 118
++P A+H LGR H+ N + GS+ T
Sbjct: 535 LVPPTNAAHQPSLGRDHDSNKKTSGSAGT 563
>05_01_0041 +
281427-281549,281671-281730,281822-281868,282013-282089,
285368-285440,286193-286281,286665-286711,286805-286885,
287011-287179,287381-287600,287679-287744,288194-288310,
288591-288628,288935-289032
Length = 434
Score = 26.6 bits (56), Expect = 8.7
Identities = 19/57 (33%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Frame = -2
Query: 315 RRLVKSHCLEPPDSRGSTVSNPCRIRLGWLRPXRRSGIIPRMVAS-HHRPLGRVHEP 148
RRL L P RGS + + L P RR PR S HR +H P
Sbjct: 322 RRLRSPRHLSPRRDRGSPIRRRSPLPRRRLTPPRRMWSPPRRPQSLRHRSRSPIHRP 378
>04_04_0873 - 28905240-28906061
Length = 273
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 6 PMLRFVSHTPKPSALNAALLQGLIFKSVTFMVVSNTAQYERNRSFGHLVHALGR 167
P+++++ P P ALN AL Q + + V F + E+ F +V ++GR
Sbjct: 198 PLMKWLFCQPNPIALNTALAQLGVARPV-FRLPYVPLPLEKRVEFVRIVESIGR 250
>02_04_0564 +
23905196-23905413,23905631-23905766,23906005-23906082,
23906627-23906710,23906826-23906894,23906974-23907057,
23907143-23907301,23907922-23908008,23908398-23908502,
23908579-23908701,23908780-23908932,23909248-23909313,
23909398-23909499
Length = 487
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 264 TVSNPCRIRLGWLRPXRRSGIIPRMVASHHRP 169
+V++P +R L P R+G +P A+ HRP
Sbjct: 2 SVASPHHLRPSPLAPACRAGGVPARAAAAHRP 33
>02_02_0277 +
8489717-8491468,8491571-8491610,8491719-8491841,
8491959-8492014
Length = 656
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +3
Query: 162 GRAAGGAKLPSAGLCLNAXKAEASLAESGKDCSLWSPESR 281
G AGG + P+A A A A E G S W+PE R
Sbjct: 7 GAGAGGEERPAAS---PAAPAVAEAVEEGPVTSRWAPEIR 43
>02_01_0486 -
3495792-3496034,3496862-3496934,3497128-3497422,
3497585-3497759,3498349-3498795,3499994-3500053
Length = 430
Score = 26.6 bits (56), Expect = 8.7
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Frame = +2
Query: 119 VREEPQFRTFGSCTRPSGRWCEATIRGIMPERL*GRSQPSRIRQG----LLTVEPRESGG 286
+ P G RP+ +++IRGI+P+R S ++ G LL + S G
Sbjct: 60 ISPSPNSARSGLPPRPNSTRTKSSIRGIIPQR--SFKAKSSLQDGDQTILLIPDTPSSSG 117
Query: 287 SKQCDFTSRRFAF 325
+ TSR F+F
Sbjct: 118 QQVKATTSRSFSF 130
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,515,053
Number of Sequences: 37544
Number of extensions: 223971
Number of successful extensions: 632
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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