Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0667.Seq
         (439 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54821| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.42 
SB_40185| Best HMM Match : WD40 (HMM E-Value=0)                        28   2.9  
SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.9  
SB_56155| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.8  
SB_26419| Best HMM Match : zf-nanos (HMM E-Value=6.5)                  27   6.8  
SB_43421| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  

>SB_54821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 528

 Score = 31.1 bits (67), Expect = 0.42
 Identities = 17/74 (22%), Positives = 35/74 (47%)
 Frame = +3

Query: 132 RSFGHLVHALGRAAGGAKLPSAGLCLNAXKAEASLAESGKDCSLWSPESREALNNVTLLV 311
           R+  H    LG    G +L  +GL ++       + E+G++  +W+ +  E  ++ T +V
Sbjct: 64  RTISHYHETLGENIQGVELEFSGLEISFKGIVGDIGETGEEYYIWTHKKIEIGHSATQIV 123

Query: 312 AVSHSKRETRRRSP 353
            V+ +     + SP
Sbjct: 124 DVNLTSESKVKLSP 137


>SB_40185| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 503

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 113 CSVREEPQFRTFGSCTRPSG 172
           CS R  P+ R F +CT PSG
Sbjct: 437 CSARTPPRRRPFTACTSPSG 456


>SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4538

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
 Frame = -2

Query: 306  VKSHCLEPPDSRGSTVSNPCRIRLGWL-RPXRRSGI-IPRMVASHHRPLGRVHEPNVRNC 133
            VK H +  PD      ++PC +R   + RP     I  PR +AS     G+V      NC
Sbjct: 1559 VKDHEIRTPDKNILCNASPCPVRYHAIQRPCLAPNITYPRFIAS-----GQVFSVKQANC 1613

Query: 132  GSSRTEQY 109
                T  Y
Sbjct: 1614 SQGHTYMY 1621


>SB_56155| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 452

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 112 LLSTRGTAVSDIWFMHSAERPVVRSYHPRDY 204
           LLS  G A++D+  +H A+ P   +Y P  Y
Sbjct: 151 LLSAFGMALADV--VHEAQEPCAHTYEPDSY 179


>SB_26419| Best HMM Match : zf-nanos (HMM E-Value=6.5)
          Length = 198

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 66  QGLIFKSVTFMVVSNTAQYERNRSFGHLVHALGRAAGGAK 185
           Q   +K +T+        YE NR  G+++  LG+   GA+
Sbjct: 141 QNCDWKHITYTSKVQGQSYEVNRRLGYIMRTLGKGHTGAR 180


>SB_43421| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 715

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
 Frame = -2

Query: 291 LEPPDSRGSTVSNPCRIRLGWLRPXRR-SGIIPRMVASH----HRPLGRVHEPNV 142
           L+PPD   +   N   I+L W +P  R +GI  + + S+    H P+  V   N+
Sbjct: 23  LKPPDEFTAEGFNQTCIKLKWKKPPGRVTGIYSKYLISYWLSGHAPVSNVDVTNI 77


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,764,864
Number of Sequences: 59808
Number of extensions: 230223
Number of successful extensions: 513
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)