Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0667.Seq
         (439 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g44880.1 68416.m04835 Rieske [2Fe-2S] domain-containing prote...    28   3.2  
At5g15410.2 68418.m01803 cyclic nucleotide-regulated ion channel...    27   4.2  
At5g15410.1 68418.m01804 cyclic nucleotide-regulated ion channel...    27   4.2  
At5g46700.1 68418.m05754 senescence-associated protein, putative...    27   5.5  
At3g18480.1 68416.m02348 CCAAT displacement protein-related / CD...    27   7.3  
At2g28250.1 68415.m03429 protein kinase family protein contains ...    27   7.3  
At2g07738.1 68415.m00989 hypothetical protein                          27   7.3  
At1g59720.1 68414.m06720 pentatricopeptide (PPR) repeat-containi...    27   7.3  
At1g11300.1 68414.m01298 S-locus lectin protein kinase family pr...    26   9.7  

>At3g44880.1 68416.m04835 Rieske [2Fe-2S] domain-containing protein
           similar to lethal leaf-spot 1 from Zea mays
           [gi:1935909]; contains Pfam PF00355 Rieske [2Fe-2S]
           domain
          Length = 537

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +2

Query: 149 GSCTR-PSGRWCEATIRGIMPERL*GRSQPSRIRQGLLTVEPRESG 283
           GSCTR P         R +   R      P+ + QGLL V P E+G
Sbjct: 161 GSCTRIPQAATSGPEARAVKSPRACAIKFPTMVSQGLLFVWPDENG 206


>At5g15410.2 68418.m01803 cyclic nucleotide-regulated ion channel /
           cyclic nucleotide-gated channel (CNGC2) identical to
           cyclic nucleotide-gated cation channel GI:3894399 from
           [Arabidopsis thaliana]
          Length = 593

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 358 PNGLRRRVSRFECETATSKVTLFR 287
           P GLRR + R+ C    +KV LFR
Sbjct: 377 PPGLRRDIKRYLCFDLINKVPLFR 400


>At5g15410.1 68418.m01804 cyclic nucleotide-regulated ion channel /
           cyclic nucleotide-gated channel (CNGC2) identical to
           cyclic nucleotide-gated cation channel GI:3894399 from
           [Arabidopsis thaliana]
          Length = 726

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 358 PNGLRRRVSRFECETATSKVTLFR 287
           P GLRR + R+ C    +KV LFR
Sbjct: 510 PPGLRRDIKRYLCFDLINKVPLFR 533


>At5g46700.1 68418.m05754 senescence-associated protein, putative
           similar to senescence-associated protein 5 [Hemerocallis
           hybrid cultivar] gi|3551954|gb|AAC34855
          Length = 269

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -2

Query: 366 PRIQMGFDVASRVLNAKRRLVKSHCLEPPDSRGSTVSNP 250
           P +   + +A    NA    ++S C +PP   G T  NP
Sbjct: 145 PELNQRYTLAQDFFNAHLDPIQSGCCKPPTKCGFTFVNP 183


>At3g18480.1 68416.m02348 CCAAT displacement protein-related /
           CDP-related similar to CCAAT displacement protein (CDP)
           (Cut-like 1) (Swiss-Prot:P39880) [Homo sapiens];
           contains Pfam:PF00904 Involucrin repeat
          Length = 689

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +3

Query: 210 NAXKAEASLAESGKDCSLWSPESREALNNVTLLVAVSHSKRETRRRSPFGSAA 368
           N+ K    LAES +D    SPE++ ++ N +LL           +R+ FG  A
Sbjct: 58  NSQKNRRKLAESTRDFKKASPENKLSMFN-SLLKGYQEEVDNITKRAKFGENA 109


>At2g28250.1 68415.m03429 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 565

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 234 LAESGKDCSLWSPESREALNNVTLLVAVSHSKRETRRRS 350
           +A   K+C L  PESR  +  V  +++       +RRR+
Sbjct: 467 MAYLAKECLLLDPESRPTMREVVQILSTITPDTSSRRRN 505


>At2g07738.1 68415.m00989 hypothetical protein
          Length = 88

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 18/66 (27%), Positives = 31/66 (46%)
 Frame = +3

Query: 3   RPMLRFVSHTPKPSALNAALLQGLIFKSVTFMVVSNTAQYERNRSFGHLVHALGRAAGGA 182
           R +L     TPK      +  Q L+ +S+ F   S   +    + F HL   +G++  G+
Sbjct: 11  RKILNLRLSTPK-IFFGLSFHQTLVKESLGFGATSVRLEPSCIQDFDHLAEEIGKSYIGS 69

Query: 183 KLPSAG 200
           ++PS G
Sbjct: 70  RVPSKG 75


>At1g59720.1 68414.m06720 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 638

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 19/50 (38%), Positives = 21/50 (42%)
 Frame = +3

Query: 111 TAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNAXKAEASLAESGKDCS 260
           T  Y    S G LVH L      A  PSA    N  +   SLAE+  D S
Sbjct: 13  TITYYHPMSIGLLVHPLSPHIPPASSPSASTAGNHHQRIFSLAETCSDMS 62


>At1g11300.1 68414.m01298 S-locus lectin protein kinase family protein
            contains protein kinase domain, Pfam:PF00069; contains
            S-locus glycoprotein family domain, Pfam:PF00954
          Length = 1635

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
 Frame = +3

Query: 204  CLNAXKAEASLAESGKDCSLWSPESREA----LNNVTLLVAVSHSKRETRRRSPFGSAAI 371
            CL +    A     G  C +W+    ++     + + L + ++HS+ +T+ R P      
Sbjct: 1198 CLQSCSCIAFAHGLGYGCMIWNRSLVDSQVLSASGMDLSIRLAHSEFKTQDRRPILIGTS 1257

Query: 372  DAIGXFXLNTCI 407
             A G F + TC+
Sbjct: 1258 LAGGIFVVATCV 1269


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,781,364
Number of Sequences: 28952
Number of extensions: 161869
Number of successful extensions: 414
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)