Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0666.Seq
         (499 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00015B5EB8 Cluster: PREDICTED: similar to GTP-bindin...    52   5e-06
UniRef50_Q7JXU4 Cluster: SD10213p; n=3; Diptera|Rep: SD10213p - ...    42   0.006
UniRef50_Q4T7C3 Cluster: Chromosome undetermined SCAF8148, whole...    37   0.29 

>UniRef50_UPI00015B5EB8 Cluster: PREDICTED: similar to GTP-binding
           protein; n=1; Nasonia vitripennis|Rep: PREDICTED:
           similar to GTP-binding protein - Nasonia vitripennis
          Length = 724

 Score = 52.4 bits (120), Expect = 5e-06
 Identities = 23/30 (76%), Positives = 28/30 (93%)
 Frame = -3

Query: 197 KKMTAKKRRAIERANRRTKTGSNFYEVSNV 108
           K++TAK+RRAIERAN+R K GSNFYEV+NV
Sbjct: 680 KQLTAKQRRAIERANKRKKIGSNFYEVTNV 709


>UniRef50_Q7JXU4 Cluster: SD10213p; n=3; Diptera|Rep: SD10213p -
           Drosophila melanogaster (Fruit fly)
          Length = 674

 Score = 42.3 bits (95), Expect = 0.006
 Identities = 16/29 (55%), Positives = 25/29 (86%)
 Frame = -3

Query: 194 KMTAKKRRAIERANRRTKTGSNFYEVSNV 108
           ++TAK++R++ER+ +R K GSNFYE +NV
Sbjct: 635 RLTAKQKRSLERSQKRKKIGSNFYETTNV 663


>UniRef50_Q4T7C3 Cluster: Chromosome undetermined SCAF8148, whole
           genome shotgun sequence; n=3; Euteleostomi|Rep:
           Chromosome undetermined SCAF8148, whole genome shotgun
           sequence - Tetraodon nigroviridis (Green puffer)
          Length = 680

 Score = 36.7 bits (81), Expect = 0.29
 Identities = 15/29 (51%), Positives = 21/29 (72%)
 Frame = -3

Query: 194 KMTAKKRRAIERANRRTKTGSNFYEVSNV 108
           +MT+K+RRA+ER+ R  K G  +YE  NV
Sbjct: 629 RMTSKQRRAMERSQRTKKVGVRYYETHNV 657


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 293,542,760
Number of Sequences: 1657284
Number of extensions: 3512626
Number of successful extensions: 8186
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8183
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29273652170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)