Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0666.Seq
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0756 + 20344406-20344590,20345811-20345880,20346229-203462...    27   6.3  

>10_08_0756 +
           20344406-20344590,20345811-20345880,20346229-20346291,
           20348390-20348521,20348604-20348737,20351245-20351323,
           20353050-20353111,20353211-20353310,20353448-20353489,
           20353605-20353646,20353959-20354150
          Length = 366

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 9/28 (32%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
 Frame = -1

Query: 106 KIEIEI-RKGPIYLNLLFNMPRKYIFLN 26
           ++E+E+ R GP+Y+  ++N+  +Y++ N
Sbjct: 120 EVELELCRMGPMYIKNIYNLVIEYLYFN 147


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,444,097
Number of Sequences: 37544
Number of extensions: 87057
Number of successful extensions: 162
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)