Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0666.Seq
         (499 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY089700-1|AAL90438.1|  674|Drosophila melanogaster SD10213p pro...    42   4e-04
AF315579-1|AAL26879.1|  674|Drosophila melanogaster nuclear GTP ...    42   4e-04
AE013599-2507|AAF57834.1|  674|Drosophila melanogaster CG6501-PA...    42   4e-04

>AY089700-1|AAL90438.1|  674|Drosophila melanogaster SD10213p
           protein.
          Length = 674

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 16/29 (55%), Positives = 25/29 (86%)
 Frame = -3

Query: 194 KMTAKKRRAIERANRRTKTGSNFYEVSNV 108
           ++TAK++R++ER+ +R K GSNFYE +NV
Sbjct: 635 RLTAKQKRSLERSQKRKKIGSNFYETTNV 663


>AF315579-1|AAL26879.1|  674|Drosophila melanogaster nuclear GTP
           binding protein protein.
          Length = 674

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 16/29 (55%), Positives = 25/29 (86%)
 Frame = -3

Query: 194 KMTAKKRRAIERANRRTKTGSNFYEVSNV 108
           ++TAK++R++ER+ +R K GSNFYE +NV
Sbjct: 635 RLTAKQKRSLERSQKRKKIGSNFYETTNV 663


>AE013599-2507|AAF57834.1|  674|Drosophila melanogaster CG6501-PA
           protein.
          Length = 674

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 16/29 (55%), Positives = 25/29 (86%)
 Frame = -3

Query: 194 KMTAKKRRAIERANRRTKTGSNFYEVSNV 108
           ++TAK++R++ER+ +R K GSNFYE +NV
Sbjct: 635 RLTAKQKRSLERSQKRKKIGSNFYETTNV 663


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,837,618
Number of Sequences: 53049
Number of extensions: 154048
Number of successful extensions: 346
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1763278080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)