Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0666.Seq
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g22220.1 68416.m02803 hAT dimerisation domain-containing prot...    27   5.3  
At5g42680.1 68418.m05199 expressed protein contains Pfam profile...    27   9.3  

>At3g22220.1 68416.m02803 hAT dimerisation domain-containing protein
           contains Pfam profiles PF04937: Protein of unknown
           function (DUF 659), PF05699 hAT family dimerisation
           domain
          Length = 761

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 118 CLMLKIEIEIRKGPIYLNLLFNMPRKYIFLNKI 20
           C +L  E+   +GP+ L  L   P K +FL  +
Sbjct: 263 CSVLVQELNSNEGPLILKFLVYCPEKVVFLKSV 295


>At5g42680.1 68418.m05199 expressed protein contains Pfam profile
           PF04759: Protein of unknown function, DUF617
          Length = 238

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -2

Query: 363 KETSDVEDHLTXDPETIKEMKRKELEACQWSIYC--RRIAQSGKKHKINDQ 217
           KE +     +  + ET K  ++K LE   W IYC  R+I  S ++  ++++
Sbjct: 116 KEMASETVRIALESET-KTSRKKVLEEYVWGIYCNGRKIGYSIRRKNMSEE 165


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,453,109
Number of Sequences: 28952
Number of extensions: 79818
Number of successful extensions: 212
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)