Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0662.Seq
         (499 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   4.7  
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    21   6.2  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    21   8.1  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = +2

Query: 389 PXGXSAKHCSYYGXC*QILSNLSPRAH 469
           P    A H  Y+       SNLSP+ +
Sbjct: 278 PSPIGASHLPYFAAAVAAASNLSPKTN 304


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -2

Query: 54  LAIDNLYLNH 25
           L IDNLYL H
Sbjct: 262 LEIDNLYLKH 271


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 4/15 (26%), Positives = 10/15 (66%)
 Frame = +3

Query: 24  YDLNISCLWLINILY 68
           + +  +C W++ +LY
Sbjct: 363 FSIGFNCFWVMKLLY 377


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,692
Number of Sequences: 336
Number of extensions: 2042
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11735024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)