Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0662.Seq
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    26   2.7  
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa...    26   3.6  
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos...    25   8.4  

>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = +1

Query: 106 NRQLSLLINENIQ*HSIYICAVRHFYISVPTDLVVTILYDSEYDNITIG 252
           +R LS  + +N+Q +++++   RH  IS+   L    +Y   +D +  G
Sbjct: 800 SRILSSKVRDNLQNNNLHVYLTRHPAISLLEALYTESVYSGLFDLVEYG 848


>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -3

Query: 473 VGXLSGSNLREFANTSHSKSSASQIXRPDPN 381
           V  +SG N  E ANT H  S  S    P P+
Sbjct: 369 VAFMSGLNNMELANTDHEWSVGSSSPEPLPS 399


>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
 Frame = -3

Query: 476 RVGXLSGSNLREFANTSHSKSSASQIX----RPDPNRGSIYSLXLHLYGSCTS 330
           ++   SG  LRE    S SK+S   I      P+ N   +YSL    Y SC S
Sbjct: 166 KLNWASGGGLRE---KSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKS 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,732,769
Number of Sequences: 5004
Number of extensions: 30565
Number of successful extensions: 51
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)