Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0662.Seq
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction...    27   7.6  
U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction...    27   7.6  
U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction...    27   7.6  
AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical ...    27   10.0 

>U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction
            molecule protein1, isoform c protein.
          Length = 1148

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +2

Query: 302  REESQSAYYXKYKSHTNVVXVNRWIRD*DPXGXSAKHCSY-YG 427
            RE   S Y  +++  T  + V  W R+  P G +A+  +Y YG
Sbjct: 1029 RESRISEYEMRFRKSTEKLTVPDWYRENRPQGQTAQTSTYRYG 1071


>U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction
            molecule protein1, isoform d protein.
          Length = 1439

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +2

Query: 302  REESQSAYYXKYKSHTNVVXVNRWIRD*DPXGXSAKHCSY-YG 427
            RE   S Y  +++  T  + V  W R+  P G +A+  +Y YG
Sbjct: 988  RESRISEYEMRFRKSTEKLTVPDWYRENRPQGQTAQTSTYRYG 1030


>U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction
            molecule protein1, isoform a protein.
          Length = 1480

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +2

Query: 302  REESQSAYYXKYKSHTNVVXVNRWIRD*DPXGXSAKHCSY-YG 427
            RE   S Y  +++  T  + V  W R+  P G +A+  +Y YG
Sbjct: 1029 RESRISEYEMRFRKSTEKLTVPDWYRENRPQGQTAQTSTYRYG 1071


>AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical
           protein Y46B2A.2 protein.
          Length = 1365

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 374 SIYSLXLHLYGSCTSXNMRFVTPHAIRTSHKTDSTL 267
           +IY L +HL G  T      VT   + +S +TD+TL
Sbjct: 689 TIYRLAVHLEGFQTIYFRASVTTQQLESSSQTDTTL 724


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,538,257
Number of Sequences: 27780
Number of extensions: 171460
Number of successful extensions: 222
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)