Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0662.Seq
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41710.2 68415.m05155 ovule development protein, putative sim...    27   7.0  
At2g41710.1 68415.m05154 ovule development protein, putative sim...    27   7.0  

>At2g41710.2 68415.m05155 ovule development protein, putative
           similar to ovule development protein AINTEGUMENTA
           (GI:1209099) [Arabidopsis thaliana];Pfam domain
           (PF00847)
          Length = 428

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = -3

Query: 491 PXTXXRVGXLSGSNLREFANTSHSKSSASQIXRPDPNRGSIYSLXLHLYGSCTSXN 324
           P     +G L G+  +E   +S S SSA  I    P   S+    L +  SC + N
Sbjct: 273 PYKAPNLGVLCGTQRKEKEISSPSSSSALSILSQSPAFKSLEEKVLKIQESCNNEN 328


>At2g41710.1 68415.m05154 ovule development protein, putative
           similar to ovule development protein AINTEGUMENTA
           (GI:1209099) [Arabidopsis thaliana];Pfam domain
           (PF00847)
          Length = 423

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = -3

Query: 491 PXTXXRVGXLSGSNLREFANTSHSKSSASQIXRPDPNRGSIYSLXLHLYGSCTSXN 324
           P     +G L G+  +E   +S S SSA  I    P   S+    L +  SC + N
Sbjct: 268 PYKAPNLGVLCGTQRKEKEISSPSSSSALSILSQSPAFKSLEEKVLKIQESCNNEN 323


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,739,353
Number of Sequences: 28952
Number of extensions: 150571
Number of successful extensions: 223
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)