Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0661.Seq
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0262 + 42378465-42378634,42379100-42379230,42379307-423794...    28   7.4  
03_05_0412 + 23993452-23994068,23996249-23996350,23996799-239969...    27   9.7  
01_03_0303 + 14792842-14792949,14793659-14793760,14794657-147948...    27   9.7  

>01_07_0262 +
           42378465-42378634,42379100-42379230,42379307-42379466,
           42379547-42379850,42379936-42380037,42380583-42380606
          Length = 296

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = +3

Query: 363 RHYDRKYIDNQWREVKVKRLHYGNL*VQNRY 455
           R+ +R+ I+  W E++V  L++GN+ ++N Y
Sbjct: 53  RYINRQIIEG-WEELRVNGLYHGNICLENVY 82


>03_05_0412 +
           23993452-23994068,23996249-23996350,23996799-23996994,
           23997075-23997259,23997394-23997498,23997625-23997722,
           23997832-23998067,23998314-23998382,23999768-23999833,
           24000513-24000611,24000688-24000750
          Length = 611

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 119 ILCKIYSEHISRILVWLCPNTS 184
           ++CK +   +SR+L+ LCPN +
Sbjct: 412 MICKAFPHTLSRLLLALCPNVT 433


>01_03_0303 +
           14792842-14792949,14793659-14793760,14794657-14794800,
           14794906-14794986,14795078-14795147,14795267-14795337,
           14795427-14795594,14796030-14796074,14796449-14796511,
           14796594-14796869,14797858-14797971,14798099-14798225,
           14798315-14798484,14798743-14798841,14799577-14799630,
           14801487-14801522,14801741-14801844,14801952-14802186,
           14802377-14802609,14802846-14803346,14803422-14803716,
           14805796-14805881,14806952-14807064,14807303-14807385,
           14808014-14808866,14809215-14809364,14809963-14811146
          Length = 1854

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +2

Query: 272 DKINSFHTIQSSFVCRQLACFSQYLH 349
           + +N F TI  +F C+Q+ C+S  ++
Sbjct: 548 NSVNFFMTIVKTFKCKQIYCYSSTIY 573


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,454,543
Number of Sequences: 37544
Number of extensions: 226260
Number of successful extensions: 322
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)