Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0661.Seq
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46809| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_452| Best HMM Match : RVT_1 (HMM E-Value=9.9e-25)                   28   5.7  
SB_40156| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_46809| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 58

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 549 VHLHSDPKLDRAQRFINF 602
           +HLH  P L+RA  F+NF
Sbjct: 5   IHLHQKPDLERALNFLNF 22


>SB_452| Best HMM Match : RVT_1 (HMM E-Value=9.9e-25)
          Length = 1486

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/59 (23%), Positives = 29/59 (49%)
 Frame = +3

Query: 243 LIKSQTVSRRIR*TRFIPYKVHLSVGNWHALVNIYTEDIFRHYDRKYIDNQWREVKVKR 419
           L+K    S R+     +P     ++G W  L +    D+F+ Y++ Y+    RE ++++
Sbjct: 779 LLKVDNCSVRVGNIDIMPISEVRNLGAWRNLQDTNRYDVFKTYEKLYLSKVEREDRLEQ 837


>SB_40156| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 292

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 288 FIPYKVHLSVGNWHALVNIYTEDIFRHYDRKYIDNQWREVK 410
           FI  K+ + +G+W  L N+Y ++        Y D  W +++
Sbjct: 195 FIAIKI-IQIGDWAKLQNVYRDEDGAKLQNVYRDEDWAKLQ 234


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,498,604
Number of Sequences: 59808
Number of extensions: 287734
Number of successful extensions: 490
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)