Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0661.Seq
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75549-5|CAA99918.1|  364|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AC006810-7|AAK84622.2|  333|Caenorhabditis elegans Serpentine re...    28   6.6  
Z93379-7|CAD54132.1|  188|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AF039053-11|AAC25879.1|  301|Caenorhabditis elegans Serpentine r...    27   8.7  

>Z75549-5|CAA99918.1|  364|Caenorhabditis elegans Hypothetical
           protein T19C4.5 protein.
          Length = 364

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = +3

Query: 225 ASFFSFLIKSQTVSRRIR*TRFIPYKVH-LSVGNWHALVNIYTEDIFRHYDRKYIDNQWR 401
           +S F+FLI + ++ RR+     IP+  H ++  N   + +I    +++  +   + N WR
Sbjct: 27  SSIFNFLISNLSILRRLLIIPGIPFVSHEINFLNRRFVTSIVVVALYKKKEWTLLQN-WR 85

Query: 402 EVKVKRLHYGNL 437
               K+  YG +
Sbjct: 86  PALEKKKGYGTV 97


>AC006810-7|AAK84622.2|  333|Caenorhabditis elegans Serpentine
           receptor, class t protein40 protein.
          Length = 333

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = -2

Query: 380 FSIIMTEYIFCVNID*SMPIAYRQMNFVWYETSLSYPSRNCLTFN 246
           + ++M   ++ +    + P+ +    F W  T L +P RN   FN
Sbjct: 153 YIVLMFPVLYFIFFMFNTPVVFSSKYFAWMYTPLIFPDRNLEYFN 197


>Z93379-7|CAD54132.1|  188|Caenorhabditis elegans Hypothetical
           protein F21H7.12 protein.
          Length = 188

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 416 FNFHFPPLIVYVFSIIMTEYIFCVN 342
           F F     IVY+FSI+ + YI+CV+
Sbjct: 147 FVFSIVTCIVYLFSIVGSIYIWCVS 171


>AF039053-11|AAC25879.1|  301|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 19 protein.
          Length = 301

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 224 CIFFFIPN*KSNSFEKDKINSFHTIQSSFVCRQLA 328
           C+F F+PN  +N F   +  SF  I    V  +LA
Sbjct: 227 CVFDFVPNFIANQFAHKQFFSFQNIGPYIVVTKLA 261


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,876,206
Number of Sequences: 27780
Number of extensions: 242688
Number of successful extensions: 408
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)