Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0661.Seq
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g61680.1 68416.m06912 lipase class 3 family protein contains ...    30   1.2  
At4g24450.1 68417.m03505 starch excess protein-related similar t...    27   8.1  

>At3g61680.1 68416.m06912 lipase class 3 family protein contains
           Pfam profile PF01764: Lipase
          Length = 649

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +1

Query: 496 RMKLSLLTNEAXKLSQITYTCIPTQNWTVPRDLLTSL*RNYEIKWXXKXIE 648
           R+ + +  +EA KLSQ+ Y C     +T+P      L RNY +K+    +E
Sbjct: 186 RLLVKVSWSEAKKLSQLAYLC--NLAYTIPEIKGEDLRRNYGLKFVTSSLE 234


>At4g24450.1 68417.m03505 starch excess protein-related similar to
           SEX1 [Arabidopsis thaliana] GI:12044358
          Length = 1284

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -2

Query: 419 SFNFHFPPLIVYVFSIIMTEYIFCVNID*SMPIAYRQMNFVWYETSLSY 273
           S NF+ PP I+YV  +++     C++I  +  I +   +  WY  S +Y
Sbjct: 694 SLNFNNPPEIIYVICVVLEN--LCLSIVNNEEIIFCTKD--WYRVSEAY 738


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,696,104
Number of Sequences: 28952
Number of extensions: 209628
Number of successful extensions: 324
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)