Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0660.Seq
(449 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181; Eukary... 126 2e-28
UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5... 75 1e-12
UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n... 71 2e-11
UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeb... 67 2e-10
UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa... 59 4e-08
UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella... 56 5e-07
UniRef50_A5BPM7 Cluster: Putative uncharacterized protein; n=1; ... 54 1e-06
UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep... 53 3e-06
UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1; Encephal... 50 2e-05
UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1; Arabid... 47 2e-04
UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2; Methano... 47 2e-04
UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2; Sulfolo... 46 3e-04
UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3; Halobac... 46 5e-04
UniRef50_A7QT43 Cluster: Chromosome undetermined scaffold_165, w... 41 0.014
UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultu... 41 0.014
UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12; Archae... 41 0.014
UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus M... 40 0.019
UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcu... 40 0.033
UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8; Euryarc... 39 0.044
UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5; Thermop... 38 0.10
UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3; Methano... 38 0.10
UniRef50_A5AVE2 Cluster: Putative uncharacterized protein; n=1; ... 37 0.18
UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 37 0.18
UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 37 0.18
UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1... 36 0.31
UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n... 36 0.41
UniRef50_A7RWV6 Cluster: Predicted protein; n=1; Nematostella ve... 36 0.41
UniRef50_Q7QWS2 Cluster: GLP_703_49671_52472; n=1; Giardia lambl... 33 2.2
UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3; Euth... 33 3.8
UniRef50_A0LPK1 Cluster: Putative uncharacterized protein; n=1; ... 32 5.0
UniRef50_Q9N4U3 Cluster: Putative uncharacterized protein; n=2; ... 32 5.0
UniRef50_Q4AEQ5 Cluster: Ribosomal protein S4:RNA-binding S4; n=... 31 8.8
UniRef50_A0CR93 Cluster: Chromosome undetermined scaffold_25, wh... 31 8.8
>UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181;
Eukaryota|Rep: 40S ribosomal protein S9 - Homo sapiens
(Human)
Length = 194
Score = 126 bits (304), Expect = 2e-28
Identities = 58/64 (90%), Positives = 62/64 (96%)
Frame = -1
Query: 254 LAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNL 75
LAKSIHHAR+LIRQRHIRVRKQVVNIPSFIVRLDS KHIDFSL+SP+GGGRPGRVKRKN
Sbjct: 119 LAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNA 178
Query: 74 RKGQ 63
+KGQ
Sbjct: 179 KKGQ 182
Score = 114 bits (274), Expect = 1e-24
Identities = 55/65 (84%), Positives = 60/65 (92%)
Frame = -2
Query: 448 RKAAREXLTLEKKXPKRLFEGNALXRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQ 269
RKAARE LTL++K P+RLFEGNAL RRLVRIGVLDE +MKLDY+LGLKIEDFLERRLQTQ
Sbjct: 54 RKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQ 113
Query: 268 VFKAG 254
VFK G
Sbjct: 114 VFKLG 118
>UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5;
Oryza sativa|Rep: 40S ribosomal protein S9, putative -
Oryza sativa subsp. japonica (Rice)
Length = 157
Score = 74.5 bits (175), Expect = 1e-12
Identities = 36/61 (59%), Positives = 46/61 (75%)
Frame = -2
Query: 436 REXLTLEKKXPKRLFEGNALXRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKA 257
+E LTL++K P+R+FEG AL R + R G+L E Q KLDYVL L +E+FL+ RLQT VFK
Sbjct: 48 QELLTLDEKNPRRIFEGEALLRHMNRYGLLGEGQNKLDYVLALTVENFLQCRLQTIVFKN 107
Query: 256 G 254
G
Sbjct: 108 G 108
>UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000501C59 UniRef100 entry -
Rattus norvegicus
Length = 199
Score = 70.5 bits (165), Expect = 2e-11
Identities = 36/64 (56%), Positives = 43/64 (67%)
Frame = -1
Query: 254 LAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNL 75
L KSI HA +L+ HIR+ KQVV+I F V LDS KH DF GGG PG VKRKN+
Sbjct: 124 LDKSIRHACVLLCHCHIRIGKQVVDIAFFFVGLDSRKHTDFFRHCLNGGGYPGSVKRKNV 183
Query: 74 RKGQ 63
+KG+
Sbjct: 184 KKGR 187
Score = 46.4 bits (105), Expect = 3e-04
Identities = 32/70 (45%), Positives = 42/70 (60%), Gaps = 7/70 (10%)
Frame = -2
Query: 448 RKAAREXLTL-EKKXPKRLFEGNALXRRLVRIGVLDEKQMK------LDYVLGLKIEDFL 290
RKA E L L +K P+ LFE N L R+LV G+L E +MK + GL+I F
Sbjct: 53 RKAFWELLLLLNEKDPRYLFEDNLLLRQLVHTGLLGEGKMKPRRSWFTSWAFGLRIY-FS 111
Query: 289 ERRLQTQVFK 260
E++LQTQVF+
Sbjct: 112 EKQLQTQVFE 121
>UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeba
histolytica|Rep: 40S ribosomal protein S9 - Entamoeba
histolytica
Length = 185
Score = 66.9 bits (156), Expect = 2e-10
Identities = 34/66 (51%), Positives = 44/66 (66%)
Frame = -2
Query: 448 RKAAREXLTLEKKXPKRLFEGNALXRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQ 269
R A+ L + K PKRL EG AL RRL +G+L Q KL++VL LK E+ LERRLQT
Sbjct: 53 RTIAKVMLMKDAKDPKRLLEGAALLRRLHNLGILPRDQNKLEFVLALKEENLLERRLQTL 112
Query: 268 VFKAGW 251
V++ G+
Sbjct: 113 VYRKGF 118
Score = 60.1 bits (139), Expect = 2e-08
Identities = 32/64 (50%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Frame = -1
Query: 251 AKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGR-PGRVKRKNL 75
AKSIHHAR+LIR + I+V KQVV++PSF+VR++S I + +P GR KRKN
Sbjct: 119 AKSIHHARVLIRGKMIKVGKQVVDVPSFLVRVESEPLIQLADNTPLTNPEINGRRKRKNN 178
Query: 74 RKGQ 63
G+
Sbjct: 179 HAGK 182
>UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa
(japonica cultivar-group)|Rep: Os07g0628300 protein -
Oryza sativa subsp. japonica (Rice)
Length = 94
Score = 59.3 bits (137), Expect = 4e-08
Identities = 29/41 (70%), Positives = 32/41 (78%)
Frame = -1
Query: 200 VRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKN 78
V +Q+VNIPSFIVRL+S KHI FSL SP GG RVKRKN
Sbjct: 27 VGRQLVNIPSFIVRLESEKHIAFSLTSPLGGSPAVRVKRKN 67
>UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella
natans|Rep: Ribosomal protein S9 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 180
Score = 55.6 bits (128), Expect = 5e-07
Identities = 26/45 (57%), Positives = 34/45 (75%)
Frame = -1
Query: 254 LAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 120
L+K+IH ARILI +HI+V+ Q+VN PSF+VR D+ I FSL S
Sbjct: 120 LSKTIHEARILIMHKHIQVKNQIVNKPSFLVRKDNEIFISFSLNS 164
>UniRef50_A5BPM7 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 103
Score = 54.4 bits (125), Expect = 1e-06
Identities = 24/35 (68%), Positives = 29/35 (82%)
Frame = -1
Query: 176 PSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLR 72
PSF+VR+DS K D SL SP GGGRPGRVK+K+L+
Sbjct: 24 PSFLVRMDSRKRGDSSLTSPLGGGRPGRVKKKSLK 58
>UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep:
Similarity - Kluyveromyces lactis (Yeast) (Candida
sphaerica)
Length = 246
Score = 52.8 bits (121), Expect = 3e-06
Identities = 27/68 (39%), Positives = 44/68 (64%)
Frame = +3
Query: 60 TLSLAEVLPLDTSRTTSTEWRFQREVNVLARVQAHNK*WDVHNLLADTNMPLPDQNSGMM 239
T S + L ++ +++TEWR EVNVL R Q+ ++ WDV +LL ++N+ L DQ+S ++
Sbjct: 10 TTSSSSSLSGHSTWSSTTEWRGSSEVNVLLRFQSDHERWDVDDLLTNSNVSLGDQDSSVV 69
Query: 240 DGLRQPAL 263
+ L Q L
Sbjct: 70 NRLGQTQL 77
Score = 45.2 bits (102), Expect = 7e-04
Identities = 21/44 (47%), Positives = 33/44 (75%)
Frame = +2
Query: 269 LRLQTTLQEVLNLQTKHIIEFHLFFIQYSNTNQTTXKGITFEQS 400
L LQ++ QE+ NLQ++ II+ L F Q +N++Q++ + ITFEQS
Sbjct: 80 LGLQSSFQEIFNLQSQDIIQLLLVFRQDTNSHQSSDQSITFEQS 123
>UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S9 -
Encephalitozoon cuniculi
Length = 184
Score = 50.0 bits (114), Expect = 2e-05
Identities = 22/48 (45%), Positives = 34/48 (70%)
Frame = -1
Query: 254 LAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFG 111
LAKS+HHAR+LI R I ++ Q+V++P F+VR D I+++ S +G
Sbjct: 123 LAKSVHHARLLIGGRCISIKDQIVDVPGFMVRADKEPLIEYNPYSRYG 170
Score = 36.7 bits (81), Expect = 0.23
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 9/70 (12%)
Frame = -2
Query: 436 REXLTLEKKXPKRL-FEGNALXRRLVRIGVL------DEKQMK--LDYVLGLKIEDFLER 284
R + L P+ + G +L RRL++ G+L D++++ L+ VL L I +LER
Sbjct: 53 RARILLTSTNPEDIPINGRSLLRRLMKYGILGGIDLCDKQEVVNGLNKVLDLTINHYLER 112
Query: 283 RLQTQVFKAG 254
RLQ +VF AG
Sbjct: 113 RLQFRVFAAG 122
>UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1;
Arabidopsis thaliana|Rep: Putative ribosomal protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 106
Score = 46.8 bits (106), Expect = 2e-04
Identities = 21/31 (67%), Positives = 26/31 (83%)
Frame = -2
Query: 346 DEKQMKLDYVLGLKIEDFLERRLQTQVFKAG 254
D ++ KLDYVL L +E+FLERRLQT VFK+G
Sbjct: 17 DSEKNKLDYVLALTVENFLERRLQTIVFKSG 47
>UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2;
Methanomicrobiales|Rep: 30S ribosomal protein S4P -
Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 181
Score = 46.8 bits (106), Expect = 2e-04
Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Frame = -2
Query: 448 RKAAREXLTLEKKXPKRLF---EGNALXRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRL 278
RKAARE + L+ ++ + + L L R G+L E +D VL LK+E L+RRL
Sbjct: 52 RKAAREIIALQSTGSEQARVERKKDELIGSLQRSGMLSENA-DIDDVLALKVEQQLDRRL 110
Query: 277 QTQVFKAGW-RSPSIMPEF 224
QTQV++ G+ RSP +F
Sbjct: 111 QTQVYRRGFARSPKQARQF 129
>UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2;
Sulfolobaceae|Rep: 30S ribosomal protein S4P -
Sulfolobus tokodaii
Length = 177
Score = 46.4 bits (105), Expect = 3e-04
Identities = 26/65 (40%), Positives = 38/65 (58%)
Frame = -2
Query: 448 RKAAREXLTLEKKXPKRLFEGNALXRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQ 269
R AR L L +R L ++L R+G++++ LD +LGL E++LERRLQT
Sbjct: 52 RHQARSLLALPPA--ERSTREKQLIQKLYRMGIIEKDNATLDDILGLNEENYLERRLQTI 109
Query: 268 VFKAG 254
V+K G
Sbjct: 110 VYKKG 114
Score = 34.3 bits (75), Expect = 1.2
Identities = 21/62 (33%), Positives = 32/62 (51%)
Frame = -1
Query: 254 LAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNL 75
LA++I+ AR LI HI + + V P +IV IDF SPF P + +N+
Sbjct: 115 LARTIYQARQLIVHGHIAIGGRRVTSPGYIVMRGEEDLIDFYPTSPFKQHPPTQQGEENV 174
Query: 74 RK 69
++
Sbjct: 175 QQ 176
>UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3;
Halobacteriaceae|Rep: 30S ribosomal protein S4P -
Halobacterium salinarium (Halobacterium halobium)
Length = 170
Score = 45.6 bits (103), Expect = 5e-04
Identities = 23/45 (51%), Positives = 31/45 (68%)
Frame = -2
Query: 388 GNALXRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAG 254
G RL RIG+L E++ +LD VL L++ D LERRLQT V++ G
Sbjct: 67 GEEFVARLQRIGILSEEE-RLDDVLSLEVTDVLERRLQTVVYREG 110
>UniRef50_A7QT43 Cluster: Chromosome undetermined scaffold_165,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_165, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 203
Score = 40.7 bits (91), Expect = 0.014
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = -1
Query: 215 QRHIRVRKQVVNIPSFI-----VRLDSGKHIDFSLKSPFGGGRPGRVKRKNLR 72
+R R R+ + IP + VR++ K IDFS GGGRPGRVKRK L+
Sbjct: 130 ERRYRGRRAFLVIPRVMGAPLSVRVEPQKLIDFSNTCLLGGGRPGRVKRKGLK 182
>UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultured
methanogenic archaeon RC-I|Rep: 30S ribosomal protein
S4P - Uncultured methanogenic archaeon RC-I
Length = 205
Score = 40.7 bits (91), Expect = 0.014
Identities = 18/43 (41%), Positives = 31/43 (72%)
Frame = -2
Query: 379 LXRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGW 251
+ ++L +G+L E KL+ VL LK++D +ERRLQT +++ G+
Sbjct: 80 IVKKLQTLGILKE-DAKLEDVLALKVDDIMERRLQTIIYRKGF 121
>UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12;
Archaea|Rep: 30S ribosomal protein S4P - Methanococcus
jannaschii
Length = 187
Score = 40.7 bits (91), Expect = 0.014
Identities = 22/46 (47%), Positives = 27/46 (58%)
Frame = -2
Query: 391 EGNALXRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAG 254
E L L + G+L + LD VL L +ED LERRLQT VF+ G
Sbjct: 70 EAVQLFNVLKKYGILKIENPTLDDVLSLTVEDILERRLQTLVFRKG 115
Score = 36.7 bits (81), Expect = 0.23
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -1
Query: 254 LAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFG-GGRPGRVK 87
LA++ AR LI HI V +VV PS++V ++ I ++ SPF P R K
Sbjct: 116 LARTPRQARQLIVHGHIAVNGRVVTAPSYMVTVEEEDKISYAKNSPFNDDNHPERAK 172
>UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus
Methanoregula boonei 6A8|Rep: Ribosomal protein S4 -
Methanoregula boonei (strain 6A8)
Length = 185
Score = 40.3 bits (90), Expect = 0.019
Identities = 31/73 (42%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Frame = -2
Query: 448 RKAAREXLTLEKKXPKR-LFEG--NALXRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRL 278
RKAARE L L + +FE + L + R G+L +D VL LK+ LERRL
Sbjct: 52 RKAARELLALMSSATNQTVFEAKKSELISHMQRAGLLGP-DADIDNVLALKVPAQLERRL 110
Query: 277 QTQVFKAGW-RSP 242
QT V++ G RSP
Sbjct: 111 QTLVYRKGLARSP 123
>UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcus
aeolicus Nankai-3|Rep: Ribosomal protein S4 -
Methanococcus aeolicus Nankai-3
Length = 177
Score = 39.5 bits (88), Expect = 0.033
Identities = 20/38 (52%), Positives = 25/38 (65%)
Frame = -2
Query: 367 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAG 254
L R G+L ++ LD VL L +E LERRLQT VF+ G
Sbjct: 77 LNRYGILLKEDATLDDVLSLNLESILERRLQTLVFRKG 114
>UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S4P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 219
Score = 39.1 bits (87), Expect = 0.044
Identities = 18/46 (39%), Positives = 29/46 (63%)
Frame = -2
Query: 391 EGNALXRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAG 254
+ + +L+R G++ + +D +L LK E+ LERRLQTQV + G
Sbjct: 78 QSEEILSKLIRYGII-KADANVDDILSLKTENILERRLQTQVLRLG 122
>UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5;
Thermoproteaceae|Rep: 30S ribosomal protein S4P -
Pyrobaculum aerophilum
Length = 159
Score = 37.9 bits (84), Expect = 0.10
Identities = 18/58 (31%), Positives = 34/58 (58%)
Frame = -2
Query: 427 LTLEKKXPKRLFEGNALXRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAG 254
+T E++ P + +L ++G +++ ++LD +L L + LERRLQT V++ G
Sbjct: 63 MTAEERAPLEM----PFKEKLYKMGFIEDPNVQLDRILSLDVRAILERRLQTIVYRMG 116
Score = 34.7 bits (76), Expect = 0.94
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = -1
Query: 254 LAKSIHHARILIRQRHIRVRKQVVNIPSFIV 162
LAKSIHHAR LI H+ V + V P F+V
Sbjct: 117 LAKSIHHARQLIVHGHVAVAGRRVTSPGFLV 147
>UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S4P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 182
Score = 37.9 bits (84), Expect = 0.10
Identities = 26/65 (40%), Positives = 35/65 (53%)
Frame = -2
Query: 448 RKAAREXLTLEKKXPKRLFEGNALXRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQ 269
R+ AR L ++ +R + L LVR G + KL+ VL L +ED L RRLQ+
Sbjct: 52 RRDARIILGMD--IDERADKEKELLDHLVRAGFISPNA-KLEEVLDLNVEDILRRRLQSL 108
Query: 268 VFKAG 254
VFK G
Sbjct: 109 VFKRG 113
>UniRef50_A5AVE2 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 247
Score = 37.1 bits (82), Expect = 0.18
Identities = 17/29 (58%), Positives = 20/29 (68%)
Frame = -1
Query: 158 LDSGKHIDFSLKSPFGGGRPGRVKRKNLR 72
+DS KH DFSL SP G R +VKRK L+
Sbjct: 1 MDSRKHGDFSLTSPLGSSRLEKVKRKGLK 29
>UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Thermoplasma
volcanium
Length = 200
Score = 37.1 bits (82), Expect = 0.18
Identities = 20/40 (50%), Positives = 27/40 (67%)
Frame = -2
Query: 379 LXRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFK 260
+ +RL R +L +K LD VL L +E+ L+RRLQT VFK
Sbjct: 76 MIKRLSRYKILSDKAT-LDDVLSLTVENILDRRLQTIVFK 114
>UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Nanoarchaeum
equitans
Length = 180
Score = 37.1 bits (82), Expect = 0.18
Identities = 19/39 (48%), Positives = 27/39 (69%)
Frame = -2
Query: 370 RLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAG 254
+L ++GVL E +LD VL L ++D LERRLQT + + G
Sbjct: 75 KLKKLGVLSENA-ELDDVLDLTVKDVLERRLQTMLVRKG 112
Score = 35.5 bits (78), Expect = 0.54
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = -1
Query: 266 VQSWLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSP 117
V+ LAK++ AR I HI V +VV+ PS++V+ + I+F SP
Sbjct: 109 VRKGLAKTMKQARQFIVHGHIMVNGEVVDAPSYLVKKEEEDKIEFVPFSP 158
>UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1;
uncultured euryarchaeote ARMAN-2|Rep: Ribosomal protein
small subunit S9 - uncultured euryarchaeote ARMAN-2
Length = 187
Score = 36.3 bits (80), Expect = 0.31
Identities = 20/39 (51%), Positives = 25/39 (64%)
Frame = -2
Query: 370 RLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAG 254
R+V+ G+L E L+ VL + FLERRLQT VFK G
Sbjct: 74 RMVKFGIL-ENGATLEKVLDITPNAFLERRLQTVVFKKG 111
>UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 09 contig 1, DNA
sequence - Ostreococcus tauri
Length = 293
Score = 35.9 bits (79), Expect = 0.41
Identities = 22/46 (47%), Positives = 24/46 (52%)
Frame = +1
Query: 115 NGDFREKSMCLPESRRTINDGMFTTCLRTRICLCRIKILA*WMDFA 252
+G+ KSMC S RT G FT CL TRI RIK A D A
Sbjct: 58 SGELSAKSMCFWLSVRTKKLGTFTICLPTRIWRWRIKTRAWCTDLA 103
>UniRef50_A7RWV6 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 739
Score = 35.9 bits (79), Expect = 0.41
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -3
Query: 258 LAGEVHPSCQNFDPAKAYSCPQASCEHPIIYCAP 157
L G VHPSC + D + CP +CE P + C P
Sbjct: 134 LCGNVHPSCSDADGTSSSCCPPLTCE-PDMMCNP 166
>UniRef50_Q7QWS2 Cluster: GLP_703_49671_52472; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_703_49671_52472 - Giardia lamblia
ATCC 50803
Length = 933
Score = 33.5 bits (73), Expect = 2.2
Identities = 23/75 (30%), Positives = 37/75 (49%)
Frame = +3
Query: 48 GGSATLSLAEVLPLDTSRTTSTEWRFQREVNVLARVQAHNK*WDVHNLLADTNMPLPDQN 227
G + +++ + L L S S + Q +V+ + R+ + HN+ +NMP P N
Sbjct: 423 GSTKLMTIIDNLKLTVSEYESIQACMQAQVDEITRLTDELNGY--HNVNICSNMPSPT-N 479
Query: 228 SGMMDGLRQPALNTC 272
S L+QPA NTC
Sbjct: 480 SHYQMALQQPASNTC 494
>UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3;
Eutheria|Rep: Ribosomal subunit protein S9 - Trichechus
manatus latirostris
Length = 30
Score = 32.7 bits (71), Expect = 3.8
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = -2
Query: 448 RKAAREXLTLEKKXPKRLF 392
RKAARE LTL++K P+RLF
Sbjct: 12 RKAARELLTLDEKDPRRLF 30
>UniRef50_A0LPK1 Cluster: Putative uncharacterized protein; n=1;
Syntrophobacter fumaroxidans MPOB|Rep: Putative
uncharacterized protein - Syntrophobacter fumaroxidans
(strain DSM 10017 / MPOB)
Length = 253
Score = 32.3 bits (70), Expect = 5.0
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +1
Query: 238 WMDFASQL*TPASADDAPRSPQSSDQAHNRVSSVFHPVLQYEPDDVXGHYLRTI-SWGPS 414
W+D SQ SA D P SP+S+ + + RV+ + + E H+L + + P
Sbjct: 184 WLDLISQAARRCSAKDEPSSPESALEYYRRVNERVEELWRQEGGHALLHHLNALFGYAPL 243
Query: 415 SXG 423
G
Sbjct: 244 KIG 246
>UniRef50_Q9N4U3 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis elegans|Rep: Putative uncharacterized
protein - Caenorhabditis elegans
Length = 382
Score = 32.3 bits (70), Expect = 5.0
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 179 CSQLACGHEYAFAGSKFWHDGW-TSPASFEHLRLQTTLQEVLNL 307
C + CG E+ F K WH+G T +FE L+ + T E+ +L
Sbjct: 152 CQRPGCGREFCFKCRKVWHEGTRTCSKTFEQLK-KITENEINDL 194
>UniRef50_Q4AEQ5 Cluster: Ribosomal protein S4:RNA-binding S4; n=1;
Chlorobium phaeobacteroides BS1|Rep: Ribosomal protein
S4:RNA-binding S4 - Chlorobium phaeobacteroides BS1
Length = 134
Score = 31.5 bits (68), Expect = 8.8
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -1
Query: 233 ARILIRQRHIRVRKQVVNIPSF 168
AR L+ RHI V Q+VN+PSF
Sbjct: 111 ARQLVSHRHITVNGQIVNVPSF 132
>UniRef50_A0CR93 Cluster: Chromosome undetermined scaffold_25, whole
genome shotgun sequence; n=2; Paramecium tetraurelia|Rep:
Chromosome undetermined scaffold_25, whole genome shotgun
sequence - Paramecium tetraurelia
Length = 1517
Score = 31.5 bits (68), Expect = 8.8
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = -2
Query: 391 EGNALXRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRL 278
+GN+ L+RIG+LDE+ + + + + +ED + +L
Sbjct: 930 KGNSRQANLIRIGLLDEENIHSEIIKKVSLEDLAQHKL 967
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 427,621,422
Number of Sequences: 1657284
Number of extensions: 8375251
Number of successful extensions: 24840
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 24164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24836
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 23604537544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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