Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0660.Seq
(449 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz... 109 1e-25
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz... 109 2e-25
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 28 0.58
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 1.8
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 26 2.3
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 26 2.3
SPBC3B9.21 |dcp1||mRNA decapping complex subunit Dcp1|Schizosacc... 25 4.1
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc... 25 5.4
SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces po... 24 9.4
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar... 24 9.4
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom... 24 9.4
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit... 24 9.4
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S... 24 9.4
>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 192
Score = 109 bits (263), Expect = 1e-25
Identities = 51/65 (78%), Positives = 59/65 (90%)
Frame = -2
Query: 448 RKAAREXLTLEKKXPKRLFEGNALXRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQ 269
R+AARE LTL++K PKRLFEGNA+ RRLVR+G+LDE +MKLDYVL L+IEDFLERRLQTQ
Sbjct: 53 RRAARELLTLDEKDPKRLFEGNAIIRRLVRLGILDESRMKLDYVLALRIEDFLERRLQTQ 112
Query: 268 VFKAG 254
VFK G
Sbjct: 113 VFKLG 117
Score = 109 bits (262), Expect = 2e-25
Identities = 49/64 (76%), Positives = 56/64 (87%)
Frame = -1
Query: 254 LAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNL 75
LAKSIHHAR+LI QRHIRV KQ+VN+PSF+VRLD+ KHIDF+L SP+GGGRPGR KRK L
Sbjct: 118 LAKSIHHARVLIFQRHIRVGKQIVNVPSFVVRLDAQKHIDFALSSPYGGGRPGRCKRKRL 177
Query: 74 RKGQ 63
R Q
Sbjct: 178 RSQQ 181
>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 191
Score = 109 bits (262), Expect = 2e-25
Identities = 51/65 (78%), Positives = 59/65 (90%)
Frame = -2
Query: 448 RKAAREXLTLEKKXPKRLFEGNALXRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQ 269
R+AARE LTL++K PKRLFEGNA+ RRLVR+G+LDE +MKLDYVL L+IEDFLERRLQTQ
Sbjct: 53 RRAARELLTLDEKDPKRLFEGNAIIRRLVRLGILDETRMKLDYVLALRIEDFLERRLQTQ 112
Query: 268 VFKAG 254
VFK G
Sbjct: 113 VFKLG 117
Score = 108 bits (259), Expect = 4e-25
Identities = 48/61 (78%), Positives = 55/61 (90%)
Frame = -1
Query: 254 LAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNL 75
LAKSIHHAR+LI QRHIRV KQ+VN+PSF+VRLD+ KHIDF+L SP+GGGRPGR KRK L
Sbjct: 118 LAKSIHHARVLIFQRHIRVGKQIVNVPSFVVRLDTQKHIDFALSSPYGGGRPGRCKRKRL 177
Query: 74 R 72
R
Sbjct: 178 R 178
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 28.3 bits (60), Expect = 0.58
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = -2
Query: 358 IGVLDEKQMKLDYVLGLKIEDFLERRLQTQV---FKAGWRSPSIMPEF*SGK 212
+G++ EK M+LD V G K+E ++RR + +A W +I E+ S K
Sbjct: 101 MGLVGEK-MELDAVKGRKVESRVDRRKLEKAERKIRAKWEKRTIKAEYESSK 151
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.6 bits (56), Expect = 1.8
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Frame = +2
Query: 74 GGSSS*HVQDDLHRMEISERSQCACQSPGAQ*MMG---CSQLACGHEY-AFAGSKFWHDG 241
G S S ++++L ++ +S G Q +G + L + + + AG+ ++D
Sbjct: 2027 GHSDSAWIEENLSDLKFLLEKSLENESVGVQSAIGNFVSTILTLSNTHPSIAGNPIFNDI 2086
Query: 242 WTSPASFEHLRLQTTLQ 292
WTS AS+ RLQ+ Q
Sbjct: 2087 WTSIASWTERRLQSCSQ 2103
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 26.2 bits (55), Expect = 2.3
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -1
Query: 335 DETRLCAWSED*GLLGASSADAGVQSWLAKSIHHARILIRQ 213
D L W ++ +L S G+QS+++ S A+ L R+
Sbjct: 129 DRQPLSTWQQNISVLSESPPQNGIQSYISSSEQAAQALTRK 169
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 26.2 bits (55), Expect = 2.3
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -2
Query: 358 IGVLDEKQMKLDYV-LGLKIEDFLERRLQTQVFKAGW 251
IG + KQ+ ++ L +ED+LE + +F+ GW
Sbjct: 879 IGKIIAKQLNFKFLDLDELLEDYLEMPIAEVIFRMGW 915
>SPBC3B9.21 |dcp1||mRNA decapping complex subunit
Dcp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 127
Score = 25.4 bits (53), Expect = 4.1
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -1
Query: 275 DAGVQSWLAKSIHHARILIRQRHIRVRKQVVN 180
D G Q WL SI L++ + RV ++N
Sbjct: 39 DVGSQKWLKTSIEGTFFLVKDQRARVGYVILN 70
>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 358
Score = 25.0 bits (52), Expect = 5.4
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -3
Query: 180 HPIIYCAPGLWQAH*LLSEISIRWRSSWTCQEEE 79
HP + GL Q H + ++ W SSW ++E
Sbjct: 321 HPKVTLIDGLVQLHVVPHHLASDWISSWKKNKQE 354
>SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 433
Score = 24.2 bits (50), Expect = 9.4
Identities = 8/33 (24%), Positives = 17/33 (51%)
Frame = -3
Query: 156 GLWQAH*LLSEISIRWRSSWTCQEEEPPQGTGW 58
G + A +L ++S W+ +W +E++ W
Sbjct: 383 GRYIAQRILGDLSEEWKDAWRWREDDKASELKW 415
>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 24.2 bits (50), Expect = 9.4
Identities = 16/57 (28%), Positives = 22/57 (38%)
Frame = -2
Query: 448 RKAAREXLTLEKKXPKRLFEGNALXRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRL 278
R+ A L+ P RL N L +L +G+L K D + RRL
Sbjct: 55 RQLAHRLSLLDPTDPFRLQYENLLLEKLFDMGILPSKSKMSDIENKANVSAICRRRL 111
>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 24.2 bits (50), Expect = 9.4
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -2
Query: 334 MKLDYVLGLKIEDFLERRLQTQVFKAGWRSPSIMPEF 224
+++D L + +E FL++ TQ+ +P I+ EF
Sbjct: 132 VRMDGALWMAVEQFLQQEFDTQILPC-LIAPEILLEF 167
>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 24.2 bits (50), Expect = 9.4
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 390 SNNLLGXFFSRVRXSR 437
+NNL+G FF R+ SR
Sbjct: 314 TNNLIGGFFQRLEASR 329
>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
E|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 24.2 bits (50), Expect = 9.4
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -1
Query: 248 KSIHHARILIRQRHIRVRKQVVNIPSFIVRL 156
+S+ H R L +H+R+ N P+ I +L
Sbjct: 306 RSLDHLRTLENLKHLRITLSYFNKPTDIAKL 336
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,715,159
Number of Sequences: 5004
Number of extensions: 33079
Number of successful extensions: 85
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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