Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0660.Seq
(449 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192 109 1e-24
11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511 109 1e-24
03_01_0382 + 2961665-2961672,2962504-2962557,2962935-2963004,296... 109 1e-24
03_03_0147 + 14838707-14838734,14839316-14839430,14839464-148396... 75 4e-14
07_03_1357 - 25982861-25983068,25983354-25983361 61 3e-10
02_05_0661 - 30693701-30693853,30694037-30694196,30694290-306943... 30 0.75
03_06_0038 + 31227349-31227621,31228120-31228212,31229439-312295... 28 3.0
10_08_0513 + 18460095-18460170,18460362-18460441,18461029-184614... 27 5.3
07_03_0696 - 20754773-20754821,20754930-20755028,20755107-207552... 27 5.3
06_01_1191 + 10240754-10240909,10241477-10241547,10241872-10242910 27 5.3
09_02_0062 - 3742857-3743045,3744641-3744916,3745933-3745992,374... 27 7.0
05_07_0151 + 28038178-28038480,28038578-28038667,28039130-280391... 27 7.0
09_06_0345 + 22428356-22428547,22428920-22429363 27 9.2
09_02_0566 + 10732359-10732497,10733114-10733267,10733448-107335... 27 9.2
>11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192
Length = 195
Score = 109 bits (262), Expect = 1e-24
Identities = 49/62 (79%), Positives = 57/62 (91%)
Frame = -1
Query: 254 LAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNL 75
+AKSIHHAR+LIRQRHIRV +Q+VNIPSF+VR++S KHIDFSL SPFGGG PGRVKRKN
Sbjct: 120 MAKSIHHARVLIRQRHIRVGRQIVNIPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRKNQ 179
Query: 74 RK 69
+K
Sbjct: 180 KK 181
Score = 82.2 bits (194), Expect = 2e-16
Identities = 40/65 (61%), Positives = 49/65 (75%)
Frame = -2
Query: 448 RKAAREXLTLEKKXPKRLFEGNALXRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQ 269
R AR LTL++K P+R+FEG AL RR+ R G+L + Q KLDYVL L +E+FL RRLQT
Sbjct: 55 RNNARHLLTLDEKNPRRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTL 114
Query: 268 VFKAG 254
VFKAG
Sbjct: 115 VFKAG 119
>11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511
Length = 218
Score = 109 bits (262), Expect = 1e-24
Identities = 49/62 (79%), Positives = 57/62 (91%)
Frame = -1
Query: 254 LAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNL 75
+AKSIHHAR+LIRQRHIRV +Q+VNIPSF+VR++S KHIDFSL SPFGGG PGRVKRKN
Sbjct: 143 MAKSIHHARVLIRQRHIRVGRQIVNIPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRKNQ 202
Query: 74 RK 69
+K
Sbjct: 203 KK 204
Score = 82.2 bits (194), Expect = 2e-16
Identities = 40/65 (61%), Positives = 49/65 (75%)
Frame = -2
Query: 448 RKAAREXLTLEKKXPKRLFEGNALXRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQ 269
R AR LTL++K P+R+FEG AL RR+ R G+L + Q KLDYVL L +E+FL RRLQT
Sbjct: 78 RNNARHLLTLDEKNPRRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTL 137
Query: 268 VFKAG 254
VFKAG
Sbjct: 138 VFKAG 142
>03_01_0382 +
2961665-2961672,2962504-2962557,2962935-2963004,
2963141-2963386,2967246-2967491,2968837-2968888,
2969270-2969651,2970527-2970681,2971389-2971713,
2975803-2975871,2976189-2976346,2976444-2976551,
2976659-2977131
Length = 781
Score = 109 bits (262), Expect = 1e-24
Identities = 49/62 (79%), Positives = 57/62 (91%)
Frame = -1
Query: 254 LAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNL 75
+AKSIHHAR+LIRQRHIRV +Q+VNIPSF+VR++S KHIDFSL SPFGGG PGRVKRKN
Sbjct: 336 MAKSIHHARVLIRQRHIRVGRQIVNIPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRKNQ 395
Query: 74 RK 69
+K
Sbjct: 396 KK 397
Score = 82.2 bits (194), Expect = 2e-16
Identities = 40/65 (61%), Positives = 49/65 (75%)
Frame = -2
Query: 448 RKAAREXLTLEKKXPKRLFEGNALXRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQ 269
R AR LTL++K P+R+FEG AL RR+ R G+L + Q KLDYVL L +E+FL RRLQT
Sbjct: 271 RNNARHLLTLDEKNPRRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTL 330
Query: 268 VFKAG 254
VFKAG
Sbjct: 331 VFKAG 335
>03_03_0147 +
14838707-14838734,14839316-14839430,14839464-14839697,
14840571-14840667
Length = 157
Score = 74.5 bits (175), Expect = 4e-14
Identities = 36/61 (59%), Positives = 46/61 (75%)
Frame = -2
Query: 436 REXLTLEKKXPKRLFEGNALXRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKA 257
+E LTL++K P+R+FEG AL R + R G+L E Q KLDYVL L +E+FL+ RLQT VFK
Sbjct: 48 QELLTLDEKNPRRIFEGEALLRHMNRYGLLGEGQNKLDYVLALTVENFLQCRLQTIVFKN 107
Query: 256 G 254
G
Sbjct: 108 G 108
Score = 28.3 bits (60), Expect = 3.0
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -1
Query: 248 KSIHHARILIRQRHI 204
KSIHH +LIRQ HI
Sbjct: 111 KSIHHDHVLIRQHHI 125
>07_03_1357 - 25982861-25983068,25983354-25983361
Length = 71
Score = 61.3 bits (142), Expect = 3e-10
Identities = 30/42 (71%), Positives = 33/42 (78%)
Frame = -1
Query: 203 RVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKN 78
RV +Q+VNIPSFIVRL+S KHI FSL SP GG RVKRKN
Sbjct: 3 RVGRQLVNIPSFIVRLESEKHIAFSLTSPLGGSPAVRVKRKN 44
>02_05_0661 -
30693701-30693853,30694037-30694196,30694290-30694381,
30694469-30694543,30694671-30694799,30694916-30695003,
30695118-30695224,30695645-30695693,30695802-30695905,
30696108-30696147,30696838-30696911
Length = 356
Score = 30.3 bits (65), Expect = 0.75
Identities = 21/67 (31%), Positives = 30/67 (44%)
Frame = -3
Query: 267 CSKLAGEVHPSCQNFDPAKAYSCPQASCEHPIIYCAPGLWQAH*LLSEISIRWRSSWTCQ 88
C AGE P+ + + AK +S P+ + E P G+ Q + LL + I W W
Sbjct: 94 CYTPAGEPIPTNKRHNAAKIFSSPEVASEEPWY----GIEQEYTLLQK-DINWPLGWPVG 148
Query: 87 EEEPPQG 67
PQG
Sbjct: 149 GFPGPQG 155
>03_06_0038 +
31227349-31227621,31228120-31228212,31229439-31229575,
31229953-31231030,31231757-31232374
Length = 732
Score = 28.3 bits (60), Expect = 3.0
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -1
Query: 341 KTDETRLCAWSED*GLLGASSADAGVQSWLAKSIHHARI 225
KTD RL S+ +L S D +W SIHH ++
Sbjct: 117 KTDNQRLSPDSQQVSVLAESHCDLASGNWKEISIHHKKM 155
>10_08_0513 +
18460095-18460170,18460362-18460441,18461029-18461491,
18461914-18462073,18462177-18462451,18462634-18462801,
18463012-18463064
Length = 424
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Frame = -3
Query: 294 SWSVVCRRRCSKLAGEVHPSC----QNFDPAKAYSCPQASC 184
+W+V+C S+ + PSC +FD K CP SC
Sbjct: 208 TWNVICTY--SQFLAQKVPSCCVSLSSFDNDKTVDCPTCSC 246
>07_03_0696 -
20754773-20754821,20754930-20755028,20755107-20755226,
20755317-20755402,20756013-20756109,20756181-20756268,
20756358-20756454,20756797-20756892,20757029-20757125,
20757571-20757689,20758559-20758616,20758751-20758857
Length = 370
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -3
Query: 363 FVLEYWMKNR*NSIMCLV*RLRTSWSVVC 277
FV +W + + M LV RL TSW+VVC
Sbjct: 273 FVDAFWNSKKQSFTMHLV-RLMTSWAVVC 300
>06_01_1191 + 10240754-10240909,10241477-10241547,10241872-10242910
Length = 421
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +2
Query: 200 HEYAFAGSKFWHDGWTSPASFEHLRLQTTLQEVLN--LQTKHIIEFHLF 340
H Y+ G+ D + P S + LRL+ ++E N + KH+++ +L+
Sbjct: 207 HGYSLDGTLECLDSISHPPSLKSLRLKGCIKETPNWFRELKHLVKIYLY 255
>09_02_0062 -
3742857-3743045,3744641-3744916,3745933-3745992,
3746554-3748102,3748183-3748418
Length = 769
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Frame = +2
Query: 206 YAFAGSK--FWHDGWTSPASFEHLRLQT 283
YA +G K W +G SP HL LQT
Sbjct: 384 YASSGKKSVMWEEGHASPQCLRHLCLQT 411
>05_07_0151 +
28038178-28038480,28038578-28038667,28039130-28039189,
28039274-28039339,28039562-28039627,28039719-28039794,
28039972-28040036,28040115-28040192,28040362-28040442,
28040526-28040610,28040702-28040748,28040969-28041028,
28041179-28041244,28041327-28041386,28041524-28041638,
28041733-28041845
Length = 476
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 219 DQNSGMMDGLRQPALNTCVCRRRSKKSSI 305
DQ+ G GLR+P LNT R +SS+
Sbjct: 20 DQDGGSGGGLRKPLLNTGSWYRMGSRSSL 48
>09_06_0345 + 22428356-22428547,22428920-22429363
Length = 211
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = -3
Query: 291 WSVVCRRRCSKLAGEVHPSCQNFDPAK--AYSCPQASCEHPII 169
W + CR R S+++ + P+ N+D A+ S + HP++
Sbjct: 153 WRMDCRLRSSQISHHMMPTLPNYDTARRPQPSLQKLHVGHPVL 195
>09_02_0566 +
10732359-10732497,10733114-10733267,10733448-10733519,
10733701-10733769,10734430-10734501,10734590-10734661,
10734769-10734840,10734928-10734999,10735121-10735192,
10735293-10735364,10735435-10735506,10735826-10735897,
10736039-10736104,10736638-10736676,10736787-10736845,
10737166-10737545,10737629-10737824,10738012-10738179,
10738618-10738736,10738873-10739083,10739163-10739403,
10739830-10739980,10740469-10740828
Length = 999
Score = 26.6 bits (56), Expect = 9.2
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -1
Query: 230 RILIRQRHIRVRKQVVN--IPSFIVRLDSGKHIDFSLKSPFG 111
R L+ + I +R +N IPS+I +D+ KH+D S G
Sbjct: 281 RELVSMKTIILRNCSINGSIPSYIGNMDNLKHLDLSFNKLTG 322
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,990,008
Number of Sequences: 37544
Number of extensions: 249398
Number of successful extensions: 746
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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